Serinus canaria (common canary): 103812387
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Entry
103812387 CDS
T05755
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
scan
Serinus canaria (common canary)
Pathway
scan03013
Nucleocytoplasmic transport
scan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103812387 (UPF3A)
03015 mRNA surveillance pathway
103812387 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scan03019
]
103812387 (UPF3A)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103812387 (UPF3A)
mRNA cycle factors
P-body specific factors
103812387 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
103812387
NCBI-ProteinID:
XP_030090064
LinkDB
All DBs
Position
Unknown
AA seq
362 aa
AA seq
DB search
MIILSFALLIPGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLENYCADED
KICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRL
REEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELASEKHKEKGEEADIDE
NKWDKSPGSGSIKSKSLESSLKEIKEKSQNDSDKEQRDLERRFREKEPERQRYRLDDGRK
HRTHYEFDKFMRRNEEELKWGKGYNQDRGKKGNYNYSFTVEAVDKLGKEDKCDDMASKKE
RIRNKDRPAMQLYQPGARIRTHVGPTSKTYDCRGKSFEDALDKKYEADNSAGASSEKTEE
AE
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgattattttgagttttgcactgctgatcccaggtttggaatatcctgcagtggttgag
tttgctccatttcagaagatttcaaaaaagaagctgaagaagaaagatgccaaagctggg
agcattgaagatgatccagaatataggaaatttctagagaattattgtgctgatgaagac
aagatctgtgccaatcctgagattcttttgggagagattgaggccaaaacaagggaactc
attgctagaagaacaacaccccttttggaatatattaaaaatagaaaattagaaaagcag
agaatacgagaagagaaaagagaagaacggaggcggagagaattggagaagaaacgtttg
cgagaggaagagaaaaggaagcgcagagaagaagaaagacgtaaaagaaaagaagtggag
aagcaaaaaaagatttctgaaaaagaaataaggatcaagcttctcaagaagcctgaaaaa
ggagatgaactggccagtgaaaagcacaaagaaaaaggtgaagaagctgacattgatgaa
aataaatgggataaatcacctggatctgggagtataaaatccaaatctttggagagttca
ctaaaagaaatcaaggaaaagtcacagaatgatagtgacaaagagcaaagagatttggag
agaagatttcgagaaaaagaacctgaaagacaaaggtatcgattggatgatggcagaaag
catagaactcactatgagtttgacaagtttatgagaaggaatgaagaagagctgaaatgg
gggaaaggatacaaccaagacagaggaaagaaagggaactacaactacagcttcactgtg
gaggcagtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaaaaggag
cgcataagaaataaggatcgtccagccatgcagttgtaccagccaggagctcgcatccga
acacatgtgggacctacaagtaaaacctatgactgccgtgggaaatcctttgaagatgct
cttgataaaaagtatgaggcagataattcagctggagctagctctgaaaagactgaagaa
gcagaataa
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