Staphylococcus capitis subsp. capitis: AYP1020_0584
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Entry
AYP1020_0584 CDS
T03970
Name
(GenBank) Ribonuclease J 2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scap
Staphylococcus capitis subsp. capitis
Pathway
scap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYP1020_0584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scap03019
]
AYP1020_0584
Messenger RNA biogenesis [BR:
scap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYP1020_0584
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
vATP-synt_E
HTH_10
RnlA_toxin
Motif
Other DBs
NCBI-ProteinID:
AKL91731
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Position
586533..588239
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AA seq
568 aa
AA seq
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MDGSLFIGGNILSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEM
LGVDIVIPDIQYVIENKDKLKGIFLSHGHEHAIGAVSYILEQIDAPVYGSKLTIALIKEN
MKARNIKKKVRYYTVSHDSVMKFKNVNVSFFNTTHSIPDSLGICIHTSYGSIVYTGEFKF
DQSLHGQYAPDMKRMAEIGDEGVFALISDSTEAEKPGYNTPENVIEHHMYDAFTKVKGRL
IVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPINEVD
NYPKNEVIIIATGMQGEPVEALSQMAQKKHKIMNIEEGDSVFLAITASANMEVIIADTLN
ELVRAGAHIIPNNKKIHASSHGCMEELKMMLNIMKPEYFIPVQGEFKMQIAHAKLAAESG
VAPEKIFLVEKGDVINYNGKDMVLNEKVNSGNVLIDGIGVGDVGNIVLRDRHLLAEDGIF
IAVVTLDPKNRRIAAGPEIQSRGFVYVRESEELLNEAEEKVRTIVEAGLQEKRIEWSEIK
QNMRDQISKLLFESTKRRPMIIPVISEI
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggacgggtcattatttataggaggtaacattttgagtttaataaagaaaaaaaataaa
gatattcgcatcataccacttggtggtgtaggcgaaatcgctaaaaatatgtacatcgtt
gaagtagacgatgaaatgtttatgttagatgcgggattaatgttccctgaagatgaaatg
ttaggtgtggatatcgttattcctgacattcagtacgtaattgaaaacaaagataaatta
aaaggtattttcctttcacatggtcatgagcacgcaattggtgcagttagctatatttta
gagcaaattgacgcgccagtttatggttctaaattaacgattgcacttattaaagaaaat
atgaaggcccgtaatattaagaaaaaagtgcgctactatacagtatctcatgattcagta
atgaaatttaaaaatgtgaatgtgagcttctttaatactacacacagtattccagatagc
ttggggatttgcattcatacttcttatggttcaattgtatatacaggagaatttaaattc
gaccaaagtttacatggtcaatatgcacctgatatgaagcgcatggctgaaattggtgat
gaaggtgtatttgctttaattagtgattctacagaagcagaaaaacctggctataacact
cctgaaaatgtcattgaacatcatatgtatgacgcattcactaaagttaaaggaagactt
atagtttcttgctatgcatctaattttattcgcatacaacaagttctaaatatagctagt
aaattgaatcgaaaagtatcattcttaggtcgctcacttgaaagttcatttaatattgct
cgtaagatgggatattttgatattccgaaggatttattaattcctatcaatgaagttgat
aattatcctaaaaatgaagttattattattgcaactggtatgcaaggcgaacctgtagag
gctttaagccaaatggcccaaaagaaacataaaattatgaatattgaagaaggcgactca
gtattcttagcaatcacggcttctgctaatatggaagtaatcatagctgatactttaaac
gaacttgtacgtgcaggggcacacatcatccctaacaataaaaaaatccatgcttcaagt
catggttgtatggaagaattaaaaatgatgttaaatataatgaaacctgaatactttatt
ccagtgcaaggtgaatttaaaatgcaaattgctcacgctaaattagcagcagaatcaggt
gtagcacctgaaaagattttcttagttgaaaaaggtgatgtgatcaattacaacggtaaa
gatatggtactcaatgaaaaggtaaattcaggtaatgtacttatcgatggtattggtgtc
ggagacgtaggtaatattgtcttaagagaccgccatttattagctgaagatggaattttc
attgctgttgtcacgctagatcctaagaatagacgtatcgctgcaggacctgaaattcaa
tcaagagggttcgtttacgttagagaaagtgaagaattattaaatgaagccgaagaaaaa
gtgcgtacaattgtagaagcaggtttacaagaaaaacgtatagaatggtctgaaattaag
caaaatatgcgagatcaaatcagcaaattattatttgaaagcacgaaacgtcgtccaatg
attattccagtaatttctgagatttaa
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