Streptomyces scabiei: SCAB_54321
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Entry
SCAB_54321 CDS
T01187
Name
(GenBank) putative transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scb
Streptomyces scabiei
Pathway
scb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCAB_54321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scb03400
]
SCAB_54321
Enzymes [BR:
scb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCAB_54321
DNA repair and recombination proteins [BR:
scb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCAB_54321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CBG72465
UniProt:
C9YY26
LinkDB
All DBs
Position
6033785..6037318
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDAPLAEAIRAASDGHRSHIDLVGPPAARPFAVAALARDAGRPVLAVTA
TGREAEDLAAALRSLLPPDGVVEYPAWETLPHERLSPRSDTVGRRLAVLRRLTHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGGTADLNRTVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAERHPELAELLDKIAEGIAVEGMESLAPVLVDDMELLIDVLPKGAMAI
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLRSIADVRDRARELDMM
WWSVSPFAADEELDSDTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVFVTEAHGPAA
RTVEVLGGEGVPARLEAELGEIAPSVVHVACGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTDTEAKG
TLEGLREGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAASRLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLESGG
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASVNTEADIAAVREELVDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAA
HQVLVPRPKTAKVGGKPLLGRDLLGWTGEFLASILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctccacggcctgctagacgccgtagtcaaggacgcccccctcgcggaagcgatc
agggcggcatccgacggacaccgctcccacatcgacctggtgggccccccggcggcccgc
cccttcgccgtggccgccctcgcgcgggacgccggccgccccgtcctcgccgtgacggcg
acgggccgtgaggccgaggacctggcggcggccctgcgctcgctgctgcccccggacggc
gtggtggagtaccccgcctgggagacgcttccgcacgagcgcctcagcccgcgcagcgac
accgtcggccgccgtctcgccgtcctgcgccgcctgacccatccgcgcccggacgacccg
gagaccggccccgtctcggtcgtcgtcgctcccgtccgctcggtgctccagccgcaggtc
aagggcctgggcgacctggagccggtcgccctgcgcacgggcgggacggccgacctgaac
cgtacggtcgaggccctggcggcagccgcgtacgcgcgcgtcgagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccc
ctgcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagagatcgctggaggtcgccgagcacggcctgtgggcgccgccctgccgtgagctgctc
ctcacggacgacgtgcgcgcccgcgcccgtgccctcgccgaacgccaccccgagctggcc
gaactcctcgacaagatcgccgaggggatcgccgtcgagggcatggaatccctcgccccg
gtcctcgtcgacgacatggaactgctgatcgacgtcctgccgaagggcgcgatggcgatc
gtgtgcgacccggagcgggtgcggacgcgggcggcggacctggtggccacctcgcaggag
ttcctgcaggcgtcctgggcggcgaccgccgggggcggcgaggcgccgatcgacgtcggc
gcggcctccctgcggtccatcgcggacgtccgcgaccgggcccgtgagctggacatgatg
tggtggtcggtgtcgccgttcgcggccgacgaggagctggactccgacaccctcaagctc
gggatgcacgcccccgagacgtaccggggggacacggccaaggccctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtcttcgtgaccgaggcgcacggcccggccgcc
cgcacggtcgaggtgctcggcggcgagggcgtcccggcccggctggaggccgagctgggg
gagatcgccccctcggtcgtgcacgtggcgtgcggctcgatcgactacggcttcgtcgac
cccgccctgaagctcgcggtcctcaccgagaccgacctgtccgggcagaaggcggccggc
aaggacggcgcccggatgcccgcccgccgccgcaagaccatcgacccgctcacgctggag
gcgggcgactacatcgtgcacgagcagcacggtgtcggccgctacatcgagatggtccag
cggaccgtgcagggcgcgacccgcgagtacctggtcgtcgagtacgcgcccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggtggcgaggcgccgaccctgcaccgcctcggcggcgccgactggacgaagacgaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctgtactccgca
cggatggcggcgcccggtcacgcgttcggggcggacaccccgtggcagcgtgaactggag
gacgccttcccgtacgcggagacccccgaccagctgacgacgatcgccgaggtcaaggag
gacatggagaagacggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtccgggccgccttcaaggccgtccaggacggcaaacaggtcgccgtg
ctcgtgccgacgaccctgctggtgcagcagcacttcggcaccttcagcgagcggtactcg
cagttcccggtgaacgtccgggccctgtcccgcttccagacggacaccgaggccaagggc
accctggaggggctgcgcgagggcgcggtcgacatcgtcatcggcacccaccgcctgttc
tcctccgagacgaagttcaaggacctcggtctggtcatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctgcgcgcgaacgtggacgtgctgacgatg
tccgcgaccccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcg
acgatcaccacgcccccggaggagcgccacccggtcctgaccttcgtcggcccgtacgag
gagaagcagatcggcgcggcgatccgccgtgaactcctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgcgcggcctcccggctgcgggagatcgtcccc
gaggcgcggatcgcgacggcccacggacagatgtcggagcaggcgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtcctcgtctccacgacgatcgtggagtcgggc
atcgacatctccaacgcgaacacgctgatcgtggagcggggggacaccttcggcctgtcg
cagctgcaccagctgcgcggccgggtcggccggggccgtgagcgcggctacgcctacttc
ctctacccgcccgagaagccgctgacggagaccgcgcacgaacggctcgcgaccatcgcc
cagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctgggcggcgagcagtccggccacatcgcgggggtcggcttcgacctg
tacgtgcggatggtcggcgaggcggtcgcggactaccggcgccagctggagagcggcggc
atcgaggaggagccgccgctggaagtgaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgcctggcgagcggctgcggttgcaggcgtaccgggcgatcgcctccgtc
aacaccgaggccgacatcgccgcggtgcgcgaggaactcgtcgaccggtacggcaagttg
cccgagccggtggagaacctgctgctcgtcgccggactgcgcatgctcgcccgggcctgc
ggggtgggcgagatcgtgctccagggcaccaacatccgtttcgcgcccgtggagttgcgc
gagtcgcaggagctgcgcctgaagcgtctgtaccccggcacggtcatcaagccggccgcc
caccaggtgctggtgccccgcccgaagacggcgaaggtgggcgggaagccgctgctcggg
cgggatctgctggggtggaccggggagttcctggcgtcgatcctcgggtcgtag
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integrated database retrieval system
