KEGG   PATHWAY: sce03050
Entry
sce03050                    Pathway                                
Name
Proteasome - Saccharomyces cerevisiae (budding yeast)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
sce03050  Proteasome
sce03050

Other DBs
GO: 0000502
Organism
Saccharomyces cerevisiae (budding yeast) [GN:sce]
Gene
YER021W  RPN3; proteasome regulatory particle lid subunit RPN3 [KO:K03033]
YIL007C  NAS2; Nas2p [KO:K06693]
YDL147W  RPN5; proteasome regulatory particle lid subunit RPN5 [KO:K03035]
YDL097C  RPN6; proteasome regulatory particle lid subunit RPN6 [KO:K03036]
YPR108W  RPN7; proteasome regulatory particle lid subunit RPN7 [KO:K03037]
YOR261C  RPN8; proteasome regulatory particle lid subunit RPN8 [KO:K03038]
YDR427W  RPN9; proteasome regulatory particle lid subunit RPN9 [KO:K03039]
YFR004W  RPN11; proteasome regulatory particle lid subunit RPN11 [KO:K03030]
YFR052W  RPN12; proteasome regulatory particle lid subunit RPN12 [KO:K03031]
YDR363W-A  SEM1; proteasome regulatory particle lid subunit SEM1 [KO:K10881]
YHR200W  RPN10; proteasome regulatory particle base subunit RPN10 [KO:K03029]
YHR027C  RPN1; proteasome regulatory particle base subunit RPN1 [KO:K03028]
YIL075C  RPN2; proteasome regulatory particle base subunit RPN2 [KO:K03032]
YLR421C  RPN13; proteasome regulatory particle lid subunit RPN13 [KO:K06691]
YKL145W  RPT1; proteasome regulatory particle base subunit RPT1 [KO:K03061]
YDL007W  RPT2; proteasome regulatory particle base subunit RPT2 [KO:K03062]
YGL048C  RPT6; proteasome regulatory particle base subunit RPT6 [KO:K03066]
YOR259C  RPT4; proteasome regulatory particle base subunit RPT4 [KO:K03064]
YOR117W  RPT5; proteasome regulatory particle base subunit RPT5 [KO:K03065]
YDR394W  RPT3; proteasome regulatory particle base subunit RPT3 [KO:K03063]
YFL007W  BLM10; Blm10p [KO:K06699]
YGL011C  SCL1; proteasome core particle subunit alpha 1 [KO:K02730] [EC:3.4.25.1]
YML092C  PRE8; proteasome core particle subunit alpha 2 [KO:K02726] [EC:3.4.25.1]
YGR135W  PRE9; proteasome core particle subunit alpha 3 [KO:K02728] [EC:3.4.25.1]
YOL038W  PRE6; proteasome core particle subunit alpha 4 [KO:K02731] [EC:3.4.25.1]
YGR253C  PUP2; proteasome core particle subunit alpha 5 [KO:K02729] [EC:3.4.25.1]
YMR314W  PRE5; proteasome core particle subunit alpha 6 [KO:K02725] [EC:3.4.25.1]
YOR362C  PRE10; proteasome core particle subunit alpha 7 [KO:K02727] [EC:3.4.25.1]
YJL001W  PRE3; proteasome core particle subunit beta 1 [KO:K02738] [EC:3.4.25.1]
YOR157C  PUP1; proteasome core particle subunit beta 2 [KO:K02739] [EC:3.4.25.1]
YER094C  PUP3; proteasome core particle subunit beta 3 [KO:K02735] [EC:3.4.25.1]
YER012W  PRE1; proteasome core particle subunit beta 4 [KO:K02734] [EC:3.4.25.1]
YPR103W  PRE2; proteasome core particle subunit beta 5 [KO:K02737] [EC:3.4.25.1]
YBL041W  PRE7; proteasome core particle subunit beta 6 [KO:K02732] [EC:3.4.25.1]
YFR050C  PRE4; proteasome core particle subunit beta 7 [KO:K02736] [EC:3.4.25.1]
YBR173C  UMP1; Ump1p [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
sce04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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