Saccharomyces cerevisiae (budding yeast): YOR005C
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Entry
YOR005C CDS
T00005
Symbol
DNL4, LIG4
Name
(RefSeq) DNA ligase (ATP) DNL4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YOR005C (DNL4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sce03400
]
YOR005C (DNL4)
Enzymes [BR:
sce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YOR005C (DNL4)
DNA repair and recombination proteins [BR:
sce03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
YOR005C (DNL4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
Fve
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
854166
NCBI-ProteinID:
NP_014647
SGD:
S000005531
UniProt:
Q08387
Structure
PDB
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All DBs
Position
XV:complement(334509..337343)
Genome browser
AA seq
944 aa
AA seq
DB search
MISALDSIPEPQNFAPSPDFKWLCEELFVKIHEVQINGTAGTGKSRSFKYYEIISNFVEM
WRKTVGNNIYPALVLALPYRDRRIYNIKDYVLIRTICSYLKLPKNSATEQRLKDWKQRVG
KGGNLSSLLVEEIAKRRAEPSSKAITIDNVNHYLDSLSGDRFASGRGFKSLVKSKPFLHC
VENMSFVELKYFFDIVLKNRVIGGQEHKLLNCWHPDAQDYLSVISDLKVVTSKLYDPKVR
LKDDDLSIKVGFAFAPQLAKKVNLSYEKICRTLHDDFLVEEKMDGERIQVHYMNYGESIK
FFSRRGIDYTYLYGASLSSGTISQHLRFTDSVKECVLDGEMVTFDAKRRVILPFGLVKGS
AKEALSFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQRKQYLNSILSPLKNIVEIVRS
SRCYGVESIKKSLEVAISLGSEGVVLKYYNSSYNVASRNNNWIKVKPEYLEEFGENLDLI
VIGRDSGKKDSFMLGLLVLDEEEYKKHQGDSSEIVDHSSQEKHIQNSRRRVKKILSFCSI
ANGISQEEFKEIDRKTRGHWKRTSEVAPPASILEFGSKIPAEWIDPSESIVLEIKSRSLD
NTETNMQKYATNCTLYGGYCKRIRYDKEWTDCYTLNDLYESRTVKSNPSYQAERSQLGLI
RKKRKRVLISDSFHQNRKQLPISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGG
KLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPNWVLDCIAYKRLILIEPNYC
FNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFL
FSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHE
KIKEQIKASDTIPKIARVVAPEWVDHSINENCQVPEEDFPVVNY
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgatatcagcactagattctatacccgagccccaaaactttgcgcctagtccagatttc
aaatggctttgtgaagagctatttgtgaagatacatgaagttcaaattaatggaacggcc
ggcactggcaaatcaaggtctttcaagtactatgaaataatatcgaatttcgtcgaaatg
tggagaaaaaccgtgggaaataatatatatcctgcactggttcttgctcttccctaccgc
gatagacgaatctataatattaaggattatgtattaataagaactatatgctcttacttg
aagttgccaaaaaattctgcaacagagcagcggttaaaagattggaaacagcgtgtcggt
aaaggtgggaatctttcttctcttcttgtggaagaaattgctaaaagaagggctgaacct
agctcaaaagcgattacaattgataacgtcaatcactatctggatagtttgagtggagac
aggttcgcttccggacgaggatttaagagtcttgtcaagtccaaacctttcctgcactgt
gtggagaatatgagtttcgtcgaattaaaatacttctttgatatcgtgcttaaaaataga
gtaataggaggtcaagagcacaaattgctaaactgctggcatcctgatgctcaggattat
cttagcgtgatatctgatttaaaggtggtaacttcaaaactttatgatccaaaagttcgt
ctaaaggatgatgatttgagtataaaagttggctttgcattcgccccccaattagccaaa
aaagtgaatctttcttatgagaaaatatgccgtacactacatgatgattttttggtagaa
gaaaaaatggatggagaacgaattcaagttcattatatgaattatggtgaatccataaaa
ttttttagtagacggggcatcgactatacctatttgtacggagcgagcttatcatcagga
actatatctcaacatttgaggtttacagatagtgttaaagaatgtgttttagatggagaa
atggtgacgtttgatgcaaaaagacgggtgattcttccattcggtcttgttaaaggaagt
gcaaaggaagcgctatcttttaatagtataaataatgttgactttcaccccttatatatg
gtgtttgatctgttatacctgaatgggacttcgttgacaccattaccccttcatcaaagg
aagcaatatctgaacagcattttaagtcccttgaaaaatattgtagaaatagtacgatct
tctagatgttatggtgtggagtcaatcaaaaagtctttagaagttgcaatctcactgggt
tcagaaggagttgttttgaaatattataattcaagttataatgtcgccagtcgaaacaac
aactggatcaaggtaaaacctgaatatttggaggaatttggagagaatttagacttaata
gtaataggcagagattctgggaaaaaagattcttttatgctagggttacttgtgctagat
gaagaagagtataaaaagcaccaaggagactcctctgaaattgtagaccactcaagccaa
gaaaaacacatacaaaattcaagaagaagggtgaaaaaaatactttcattctgttctatc
gcaaacggtatatctcaagaagaattcaaagaaatcgaccgcaaaacgagaggacattgg
aaaagaacctccgaagttgctccccctgcttcaattttagaatttggctcaaaaatacct
gccgaatggattgaccccagtgaatcaattgttctagaaataaaatcacggtctttggat
aacacagaaacgaatatgcagaagtacgctaccaattgtactttgtacggtggctattgt
aaaagaatacggtacgataaagaatggacagattgttacacacttaacgacttatacgaa
agtaggacggttaaatctaaccccagctatcaagcggaaaggtcacagcttggattgata
cggaaaaagagaaagagagtacttatttcagacagctttcaccaaaacaggaaacaactg
ccaatttcaaacatctttgccggattacttttttatgttctctctgactatgtcacggag
gacactggaatacggattacacgggcagaacttgaaaaaactattgtggaacatggtggt
aaactgatatataatgtaattttaaaacgtcattcaattggggacgttcggttaatcagc
tgtaaaactaccacggaatgcaaggctttaatagatcgaggatatgatatattgcaccca
aattgggtactcgattgtatagcatataagaggctcatcctgatcgagcccaattattgc
tttaacgtctctcaaaaaatgagagccgtcgctgaaaaaagggtagattgtttgggtgat
agttttgaaaatgacatttcggaaaccaaactgtcatcattgtataaatcacaactaagt
ctaccaccgatgggggaactcgagatagattctgaggttcggcggtttccattattttta
ttctccaacaggattgcatacgtaccacgtcgcaaaattagcacagaagatgacattata
gaaatgaaaattaagttgtttggtggaaaaataacagatcaacagtcactttgtaactta
ataattataccatatactgatcctattttgaggaaagactgcatgaatgaggtacacgaa
aaaataaaagaacaaataaaggcttctgatactataccgaaaatagccagggtcgttgcc
cctgaatgggtggatcattctattaatgaaaactgtcaagtgcctgaagaagacttcccc
gtagtcaactactga
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