Sphingobium chlorophenolicum: Sphch_2999
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Entry
Sphch_2999 CDS
T01522
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sphch_2999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sch03400
]
Sphch_2999
Enzymes [BR:
sch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sphch_2999
DNA repair and recombination proteins [BR:
sch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sphch_2999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEG50629
UniProt:
F6F2G7
LinkDB
All DBs
Position
2:complement(96623..99130)
Genome browser
AA seq
835 aa
AA seq
DB search
MAADPLAPYNAKRDFRRTREPAGKVAKKGGNSFVVQKHAATRLHWDFRLEIDGVLKSWAV
TKGPSLDPADKRLAVRTEDHPIDYGSFEGNIPKGEYGGGTVMLWDRGSWEPVPGKSADDL
KDGHLHFILHGERMKGEWLLVRMKGRPGEKRENWLLRKIDDGEAGKGDMLVERALTSVLT
DRSMAQIEADAEATQSLKGSGKRAFSDKMRAAEVHNAKVRSKAGRKTGGGALPRFVKPQL
ATLVDSVPAGNDWLHEIKYDGYRMLIAVDGAKVKLFTRNGLDWTDKFGPLAESIAALDLP
SALIDGEVVALGEDGNPSFSALQAVLKRGHGAQRADTPFHLFAFDLLFLDGMDLRPLPTI
ERKERLEALLHDSQPPVHVADHLIGAGEKLYRSLCDAGQEGIIAKRIDAPYRGDRTRNWV
KVKCVRRQEFVLVGWTKSKAKGRPFSSLLLAQNEGGAMVYKGKVGTGFDAAAMEELAGAM
APLAVDKAPLEVPRAEARGVQWIKPRLVAEVAFAEFTGDGRVRHGTFLGLRSDKPAKAVQ
PERAEPAPLPQNGVTISNRERIIFPEDGLTKGDLADYYARVAPLMLPFAANRPISLVRCP
QGRAKKCFFQKHDSGSFGDHVRQVPIREKDEGWEDYIYVEDADGLMACVQMGTIEFHGWE
SRADAVEKPDRMIFDLDPDEGMDFAKVRQAARDIRDRLSDIGLVSFAMLSGGKGVHVVAP
LTPGHDWDAHKDFASRFAQALSAAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTAVLPYS
VRARPGAPVAVPIDWDELGGMKDAHPFGIRDAEKLLRRSRELNGWGFAAQGLPGL
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgacccactggccccctataacgccaagcgcgatttccggcgcacccgcgaa
ccggcgggcaaggtcgcgaagaagggcggcaacagcttcgtcgtccagaaacatgcggcg
acgcggctgcattgggatttccggctggagattgatggggttctgaagagttgggcggtg
accaaggggccgagcctggatcccgccgacaagcggctggccgtccgcacggaggatcat
ccgatcgattatggcagtttcgagggtaatattcccaagggcgaatatggcggcggcacg
gtcatgctgtgggaccggggtagctgggaaccggtgccgggcaagagcgccgacgacctg
aaggacggccatctccatttcatcctgcatggagagcggatgaagggcgaatggctgctg
gtccgcatgaagggacggccgggggagaagcgcgagaactggctgctccgcaagatcgac
gatggggaggcgggaaagggcgacatgctggtcgagcgggcgttgaccagtgtgctgacg
gaccggtccatggcgcagatcgaggcggatgcggaggccacccaatcgttgaagggcagc
gggaaaagggccttttccgacaagatgcgggcggcggaggtgcataacgccaaggtgcgt
tcgaaggccgggcggaagacgggcgggggcgcgcttccccgtttcgtgaagccgcaactg
gcgacgcttgtcgacagcgtgcctgccgggaatgactggctgcatgagatcaaatatgac
ggctatcgcatgctgatcgcggtcgatggcgcgaaagtgaagctgttcacccgcaacggt
ctggactggaccgacaagtttggcccgctggcggaaagcatcgccgcgctggacctgccc
tccgcgctgatcgacggggaggtggtggcgctgggcgaggatggcaatcccagtttttcg
gcgttgcaggcggtgctgaagcgcggccatggcgcgcaacgcgccgatacgccctttcac
ctcttcgccttcgacctgctcttcctggacggcatggatttgaggccgttgcccaccata
gagcgcaaggaaaggctggaggctttgctgcacgacagccagccgcccgtccatgtcgcc
gaccatctgatcggcgcgggggagaagctctaccggtcgctgtgcgacgccgggcaggag
ggcattatcgccaagcggatcgacgccccctatcggggcgaccggacgcgtaactgggtc
aaggtcaaatgcgtgcggcggcaggaattcgttctggtcggctggacgaaaagcaaggcg
aagggtcgccccttctcctccctgctgctcgcccagaatgaagggggggcgatggtgtac
aagggcaaggtcggcaccggcttcgacgcggcggcgatggaggaactggccggggcgatg
gcgccgctggccgtcgacaaggcgccgctggaggtgccgcgagccgaggcgcggggcgtg
caatggatcaagccccggctggtggcggaggtcgccttcgccgaattcaccggcgacggg
cgcgtccggcacggcactttcctgggcctgcggtccgacaagcctgccaaggccgtgcag
ccggaaagggccgaacccgcgcccttgccccagaacggcgtgacgatcagcaatcgcgag
cggatcatctttcccgaagacggcctgaccaaaggcgacctggccgactattatgcgcgt
gtcgctccgctgatgctgccctttgccgcgaaccggccgatcagtctggtccgctgtcct
caggggcgggcgaagaaatgcttctttcagaagcatgacagcgggtcgttcggcgatcat
gtccgccaggtgcccatccgcgagaaagatgaggggtgggaggattatatctatgtcgag
gatgccgacgggctgatggcgtgcgtgcagatgggcaccatcgaattccacggatgggag
agccgcgccgacgcggtggagaagcccgaccggatgatattcgacctcgatccggacgag
ggcatggatttcgccaaagtgcggcaggcggcgcgggacattcgtgatcggctgagcgat
atcgggctcgtctccttcgccatgctttccggcggcaagggggtgcatgtggtggcgccg
ctgacgccgggtcatgactgggacgcgcacaaggatttcgcgtcccgcttcgcgcaggca
ttgagcgcggccgaacccgaccgtttcgtcgcgacgatgagcaaggcgaagcgcaagggg
cgcatcttcatcgactggctgcgaaatcagagggggagcactgccgtgctgccttattcc
gtgcgggctcgtcccggtgcgccggttgcggtgccgatcgattgggatgaattgggtggg
atgaaggatgctcatcccttcggcatccgagatgctgaaaaattgttgcggcgatctcgg
gaactcaacggatgggggttcgcggcgcaggggttgcctggattataa
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