Streptomyces chromofuscus: IPT68_10820
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Entry
IPT68_10820 CDS
T07378
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
schf
Streptomyces chromofuscus
Pathway
schf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPT68_10820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schf03019
]
IPT68_10820
03400 DNA repair and recombination proteins [BR:
schf03400
]
IPT68_10820
Enzymes [BR:
schf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IPT68_10820
Messenger RNA biogenesis [BR:
schf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPT68_10820
DNA repair and recombination proteins [BR:
schf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IPT68_10820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
AAA_30
PcrA_UvrD_tudor
MarR_2
SelB-wing_3
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QOV46350
UniProt:
A0A7M2TCE1
LinkDB
All DBs
Position
complement(2409956..2411653)
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AA seq
565 aa
AA seq
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MSDPRDPDRLRQAAEEVFGWRELRPGQLTAMEAVTAARDTLVVMPTGAGKSAVYQVAALL
LPGPTVVVSPLIALQRDQIAGLLSHRAPDAVAVNSAQPAGETAAAWDAVQHGDAEYLFLS
PEQLTKDEVVERLARAEPSLFVVDEAQCVASWGHDFRPDYLRLAQAVRRVGRPTVLALTA
TAAPPVREEIVQRLEMADPALVVAGFDRPNIALEVRRFQDDADKRRAVVERAATEPKPGI
VYAATRRDAEEYAAELAGLGLSAAAYHAGLAGGERSRVHDAFLSGDADVIVATSAFGMGI
DKEDVRFVLHASVPGSLDAYYQEIGRAGRDGAPAVAVLHYRPQDSALQRLFATRAPDEET
LGEVARRIDEHSGPVGLADVGERTDLSRRRVTAAANLLEQAGAVRTDAEGRVRSVPGVTA
DEAAAHAAEVAEARRRLERSRLEMVLGYAETTGCRRRFLLGYFGEPYEAPCGACDVCRDD
GSPAAAEGTVVEGAGDTGDAPSAHPAAASFPAGTPVRHSEWGDGTVMSEEGDRITVLFES
MGYRTLSLAAIAGKGLLSERAETAD
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatccccgtgacccggaccggctgcggcaggccgccgaagaggtgttcggttgg
cgagagctgcggccgggacagctgaccgcgatggaagcggtgacggcggcccgcgacacg
ctggtggtcatgccgaccggcgcgggcaagtcggcggtgtaccaggtggcggcgctgctg
ctgcccggaccgaccgtcgtcgtctccccgctcatcgccctgcagcgggaccagatcgcc
ggcctgctgagccaccgggccccggacgccgtcgccgtcaactcggcgcagccggccggg
gagacggcggccgcctgggacgcggtgcagcacggcgacgccgagtacctgttcctctcg
cccgagcagctcaccaaggacgaggtggtcgaacgcctggcccgcgccgagccctccctg
ttcgtcgtggacgaggcgcagtgcgtggcttcctggggccacgacttccgccccgactac
ctgcgcctggcccaggccgtccggcgggtgggcaggcccacggtcctggccctgacggcc
acggccgcgccgccggtgcgcgaggagatcgtccagcggctggagatggcggaccccgca
ctggtcgtcgccggtttcgaccggccgaacatcgccctggaggtgcgccgcttccaggac
gacgcggacaagcgccgggcggtggtggagcgggccgcgacggagcccaagcccggcatc
gtgtacgccgccacccgcagggacgcggaggagtacgcggccgagctcgcagggctgggc
ctgtcggccgccgcgtaccacgccgggctggccggtggggagcgttcccgggtgcacgac
gccttcctgtccggcgatgccgacgtgatcgtcgccacctcggctttcggcatgggcatc
gacaaggaggacgtacggttcgtgctgcacgcctccgtgcccggttcgctcgacgcctac
taccaggagatcggacgtgccggccgcgacggcgccccggcggtcgccgtcctccactac
cggccgcaggacagcgccctgcagcgtctcttcgccacgcgcgcacccgacgaggagacc
ctcggcgaggtcgcgcggcggatcgacgagcacagcggtccggtcgggctggccgacgtc
ggtgaacggacggacctgtcacgccggcgtgtgaccgccgcggccaacctgctggagcag
gcgggagccgtgcgcaccgacgccgaggggcgggtgcggtccgtccccggcgtgacggcc
gacgaggccgccgcgcacgccgcggaggtggcggaggcccgcagacggctggagcggtcg
aggctggagatggtgctgggatacgcagagacgacgggctgccgtcgccgcttcctcctc
ggctacttcggtgagccctacgaagccccctgcggcgcctgcgacgtctgccgcgacgac
ggctcacccgccgctgccgagggcacggtcgtcgagggagcgggggacacgggcgacgcc
ccgtcggcccatccggccgccgcctcgttcccggcggggacgccggtgcggcacagcgag
tggggcgacggcacggtgatgagcgaggagggcgaccggatcaccgtcctgttcgagtcc
atgggctaccggaccctgtccctggccgcgatcgccggcaaggggctgctcagcgagcgg
gcggagacggcggactga
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