Streptomyces chromofuscus: IPT68_30465
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Entry
IPT68_30465 CDS
T07378
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
schf
Streptomyces chromofuscus
Pathway
schf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
schf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IPT68_30465 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schf03400
]
IPT68_30465 (ligD)
Enzymes [BR:
schf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IPT68_30465 (ligD)
DNA repair and recombination proteins [BR:
schf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IPT68_30465 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
baeRF_family6
Motif
Other DBs
NCBI-ProteinID:
QOV43946
UniProt:
A0A7M2T5K7
LinkDB
All DBs
Position
6784470..6785396
Genome browser
AA seq
308 aa
AA seq
DB search
MSGADAVTVRAGRRTVEVHRPDKLLFPGGGEAKEYTKRDLVDYYRAVAPFMLPHLRGRPL
MLQRHPDGLDGPQFMQKNTPESYPEWITRVEVPKEGGTVRHTVCDDAATLVHLADQACLT
LHRWLSRSDRLDRPDRMVFDLDPSGDSFAPVREAAWQLADLLDELRLPSALMTTGSRGLH
VVVPLNGHHDFDEVRAFARDVADTLAAAHPDRLTTAARKKDRGERLYLDVQRNGYAQTAV
VPFSVRARPGAPVAVPVAWDQLDHPGFGPRRWTLADAVDQARTNPWAGVPNRGRSLGPAR
RRLNALRG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggtgccgacgccgtcaccgtgcgggcgggccggcgcacggtcgaggtgcaccgg
ccggacaagctgctcttccccggcggcggcgaggccaaggagtacaccaagcgggacctc
gtcgactactaccgggccgtcgcgccgttcatgctgccgcacctgcggggccgtccgctg
atgctccagcggcatccggacggcctcgacggcccccaattcatgcagaagaacacgccg
gagagctacccggagtggatcacccgcgtcgaggtgcccaaggagggcggcaccgtccgc
cacaccgtctgcgacgacgccgccaccctcgtccacctcgccgaccaggcgtgcctcacg
ctgcaccgctggctctcccggtccgaccggctcgaccggccggaccgcatggtgttcgac
ctggacccctccggcgactccttcgcgcccgtgcgcgaggccgcctggcagctcgcggac
ctgctcgacgaactgaggctgccgtcggcgctgatgaccaccggctcgcgcggactgcat
gtcgtcgtgccgctcaacgggcaccacgacttcgacgaggtgcgcgcgttcgcccgggac
gtcgccgacaccctggccgccgcgcaccccgaccggctcaccaccgccgcccgcaagaag
gaccgcggcgagcggctctacctcgacgtgcagcgcaacggctacgcgcagaccgccgtc
gtgcccttctccgtacgggcccggcccggcgcgccggtcgccgtgcccgtggcctgggac
cagctcgaccaccctggcttcggcccgcgccgctggaccctcgccgacgccgtcgaccag
gcacgcaccaacccctgggccggcgtgccgaaccgcggccgctccctcgggccggcccgg
cgcaggctcaacgccctgcgcggctga
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