Siniperca chuatsi (mandarin fish): 122864999
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Entry
122864999 CDS
T08948
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122864999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122864999
03036 Chromosome and associated proteins [BR:
schu03036
]
122864999
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122864999
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122864999
mRNA degradation factors
5'-3' decay
Decapping complex
122864999
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122864999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
122864999
NCBI-ProteinID:
XP_044028814
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All DBs
Position
LG17:7490471..7502352
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AA seq
489 aa
AA seq
DB search
MATARTETVGPVVMGLNKQNGQLRGQTKPASVLPAPTNQGKALGAPQIASGASQDGGGIK
FGDDWKKSLKLPPKDTRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPGSIDKSLYVAEFHSSGADCDVEEVEE
KPGRQQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaaccgaaaccgttggcccagtcgtcatgggactgaacaagcagaat
gggcagctcagaggacagaccaaaccagcttcagtcctgccagcacccacaaatcaagga
aaggctttgggtgcaccccagatagcaagcggtgcctctcaggacggaggaggcatcaag
tttggagatgactggaaaaagagcctaaagctccctcccaaagacaccagggtcaaaacc
tcagatgtgacgtccactaaggggaatgaatttgaagattactgtctgaaaagagaactc
ctgatgggaatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgggctaagaatggaacagggaaaagt
ggagcctatctcatcccactgctagagagaatagacctgaaaaaggaccacatacaggca
cttgtcatggtgcccacccgtgagctggcactgcaggtgagccagatctccatccagatc
agtaaacacctgggaggagtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgcctggatgagaccgtgcatgtggtcatcgccacgcccggtaggatcctg
gacttgataaagaagggagtggcaaaggtggatagagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagattctgctctactctgcaaccttccccatcagcgtgcagaagttc
atggccaagcaccttcagaaaccctatgagattaacctgatggaggaactgactctgaag
ggcattactcagtactacgcctacgtcacagagaggcagaaagtccactgcctcaacaca
ctattctccaggcttcagatcaaccagtcaattatcttctgtaactccactcagagggtg
gagctcttggccaagaagatcactcagctgggttactcctgcttctacatccatgccaag
atgatgcaggaatatagaaaccgtgtgttccacgacttcagaaatggactgtgcagaaac
ctggtttgcactgatctcttcactagaggtattgacatccaggctgtcaacgtcgtcatc
aacttcgacttcccgaagaatgctgagacttacctccatcgtattggaagatcagggagg
tttggtcacctgggcttggcaatcaaccttatcacatcagaggaccgattcaacctgaag
gccatcgaagaccagctggtgaccgacatcaagcccattcctggcagcatcgacaagagc
ctctatgtggctgagttccactcgtccggcgccgactgtgatgtggaggaggttgaggag
aaaccaggacgccaacaggacagcacctaa
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