Siniperca chuatsi (mandarin fish): 122871437
Help
Entry
122871437 CDS
T08948
Symbol
lrp6
Name
(RefSeq) low-density lipoprotein receptor-related protein 6 isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04150
mTOR signaling pathway
schu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
122871437 (lrp6)
04150 mTOR signaling pathway
122871437 (lrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122871437 (lrp6)
Membrane trafficking [BR:
schu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
122871437 (lrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
SGL
DUF5050
cEGF
EGF
Motif
Other DBs
NCBI-GeneID:
122871437
NCBI-ProteinID:
XP_044042493
LinkDB
All DBs
Position
LG23:853818..905659
Genome browser
AA seq
1624 aa
AA seq
DB search
MGVVLRSLLLCSFCFLIRGVPLLLYANRRDLRLVDVAHEKANATVVVGGLEDAAAVDYVY
SQGLIYWSDVSEEAIKRTVFNQSGASAVQTVVPGLASPDGLACDWLGSKLYWTDSETNRI
EVAELDGSLRKVLFWQELDQPRAIALDPERGYMYWTDWGEIPKIERAGMDGTNRSMIVDK
EIYWPNGLTLDYSQQKLYWADAKHNFIHRCNLDGSSREVVVKGELPHPFALTLYEDTLFW
TDWNTHSIHSCRKQTGGEQRVVHSDIFSPMDIHVFSAKRQNILASSPCSVKNGGCSHLCL
VSPAKPSYRCACPTGVQLLEDGKTCRDGATQMLLLARRTDLRRISLDTPDFTDIILQVDE
IRHAIAIDYDPVEGYIYWTDDDVKAIRRSLLDGSDAQFVVTSQVNHPDGIAVDWIARNLY
WTDTGTDRIEVTRLNGTMRKILISEDLDEPRAIVLDPVAGYMYWTDWGEVPKIERADLDG
MERVVMVNTSLGWPNGLALDYDERKIYWGDAKTDKIEVMNMDGTGRRVLVEDKLPHIFGF
TLLGDFIYWTDWQRRSIERVHKRTAEREFIIDQLPDLMGLKATYVHKTFGTNPCAKNNGG
CSHLCLYKPQGVQCGCPIGLELIADMRTCIVPEAFLLFSRHTDIRRISLETNNNNVAIPL
TGVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKN
LYWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGYMYWTEWGGKPKIDRAAM
DGTGRITLVADVGRANGLTIDYAERRLYWTDLDTTLIESSNMLGQDREVIADDLPHPFGL
TQYQDYIYWTDWSQRSIERANKTSGQNRTVIQGHLDYVMDILVFHSSRQGGWNACASTNG
HCSHLCLAVPVSSFVCGCPAHFSLNYDNKTCSAPTSFLLFSQKTAINRMVIDEQQSPDII
LPIHSLRNVRAIDYDPLDKQLYWIDSKQNVIRRAQEDGNQSMTVVSSSLGGPSQGLQLYD
LSIDIYSRFIYWTSEVTNVINVTRTDGRRVGVVLRGEHDKPRAIVVNPERGYMYFTNLLE
RSPKIERAALDGTEREVLFFSGLGKPVALAIDNEVGKLFWVDSDLRRIESSDLSGANRIV
IADSNILQPVGLTVFGNHLYWIDKQQQMIERIDKTTREGRTKIQARVAYLSDIHAVHELD
MKEYSKHPCTWENGGCSHICIVKGDGTTRCSCPVHLVLLQDELSCGEPPTCSPEQFSCTS
GEVDCIPQAWRCDGYPECDDSSDEEDCPVCSESEFQCDSRQCIDLSLRCNGEINCQDRSD
ENKCEGETVRCPPDQFTCSNGQCIGKHKKCDHNMDCTDNSDEIGCYPTEEPPPPSNNTIG
SIVGVVMALFVVGAVYFVCQRVLCPQMKDDGETVTNDFVVHGPSSVPLGYVPHPSSLSSS
LPGMSRGKSVIGSLSIMGGSSGPPYDRAHVTGASSSSSSSTKGTYFPPILNPPPSPATVR
SQYTVEFGYSSNSPSTHRSYSYRPYTYRQFAPPTTPCSTDVCDSDYTPGRRAPLKSSAAA
SAAAKGYTSDLNYDSEPFPPPPTPRSQYLSAEENCESCPPSPYTERSYSHHLYPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcgtgctgcggagcctgttgttgtgtagtttttgttttctcatacgaggcgtg
ccgctgttgctgtacgcgaaccggcgggacctccggctcgtggacgtggcacacgagaag
gccaacgccacggtggtggtgggggggctggaggacgccgccgccgtggactacgtctac
tcccagggcctcatttactggagcgacgtgagcgaggaggccatcaaacgcacagtcttc
aaccagtcgggggccagcgcggtccagacggtggtcccgggtctggcctccccggacgga
ctggcctgtgattggttagggagtaaactttactggaccgactcggaaaccaatcggatc
gaggtggcggagctggatgggtctctgaggaaagttttgttctggcaggagctggaccag
ccgagggccatcgctctggatccagaacgagggtacatgtactggacagactggggtgag
atcccaaagatcgagcgggcggggatggacgggacgaatcgctccatgatcgtggataaa
gagatctactggcccaacggtctgactctggactacagccagcagaaactgtactgggcc
gacgccaagcacaacttcatccaccgctgcaacctggacggatcctccagggaggtggtg
gttaaaggggagctgccccacccgttcgccctcaccctgtacgaggacactctgttctgg
accgactggaacacgcactccatccactcctgcaggaaacagaccgggggcgagcagcgc
gtcgtccactcggacatcttctcgccgatggacatccacgtcttcagcgccaagagacaa
aacatcctggccagcagcccgtgctcggtgaagaacggagggtgttcccacctgtgcctc
gtctctccggcgaagccctcctatcgctgtgcctgtcccaccggagtccagctgctggag
gacgggaagacctgcagagacggtgccactcagatgctgctgttggctcggcgaacagac
ctgcggcgaatctctctggacacgccggacttcaccgacatcatcctgcaggtggacgag
atccgccacgccatcgccatcgactacgacccagtggagggatacatctactggacggac
gacgacgtgaaggccatccgccgctccctgctggacggcagcgacgcccagttcgtggtc
acgtctcaggtgaaccaccccgacggcatcgccgtcgactggatcgcccggaacctctac
tggaccgacaccgggaccgaccgcatcgaggtgacccgccttaacgggaccatgcgcaag
atcctgatctctgaagacctggacgagcccagagccatcgtgctggaccccgtggccggc
tacatgtactggaccgactggggcgaggtgccgaagatcgagcgtgccgatctggacggg
atggagcgagtggtgatggtcaacacctctctgggctggcccaacggcctcgccctcgac
tacgacgaacgcaagatctactggggagacgccaagaccgacaagatcgaggtgatgaac
atggacgggacgggacgacgggtgctggtggaggacaaacttcctcacatcttcggcttc
actctgctgggcgacttcatctactggaccgactggcagcgtcgcagcatcgagcgcgtc
cacaaacgcaccgcggagagagagttcatcatcgaccagctgcccgacctcatgggcctg
aaggccacttatgtacacaagaccttcggtacgaacccgtgtgcgaagaataacggcggc
tgcagtcacctctgtctctacaagcctcagggcgttcagtgcggctgtcccatcggcctc
gaactcatcgccgacatgaggacctgcatcgtccccgaggccttcctgctcttctcccgc
cacaccgacatccgccgcatctccctggagaccaacaacaacaacgtggccatcccgctc
accggcgtcaaggaggcctcggcgctcgacttcgacgtcaccgacaaccgcatctactgg
accgacatcactctgaagaccatcagccgggccttcatgaacggcagcgctctggagcac
gtggtggagttcggtctggactacccggaggggatggcggtggactggctggggaagaac
ctgtactgggccgacaccggcaccaaccgcatcgaggtggccaaactggacgggcagcac
cggcaggtcctggtctggaaggatctggacagtccacgagctctggctctggatcctgct
gaagggtacatgtactggactgagtggggcgggaagccaaagatcgaccgagcagcgatg
gacgggacgggtcggatcactctggtggccgacgtgggccgagccaacggactcaccatc
gactacgcagagcgccgcctctactggaccgacctcgacaccacgctcatcgaatcgtcc
aacatgctcggtcaggaccgtgaggtgatagccgacgacctccctcaccccttcggcctc
acgcagtaccaggactacatctactggaccgactggagccagcgcagcatcgagcgagcc
aacaagaccagtggtcagaaccgcaccgtcatccagggccacctggactacgtcatggac
atcctggtgtttcactcgtccagacagggcggctggaacgcctgcgcctccaccaacgga
cactgctcccacctctgcctcgccgtccccgtcagcagcttcgtctgcggatgccccgcc
cacttctcccttaactacgacaacaagacctgcagcgctccgacgtccttcctgctgttc
agccagaagacggccatcaaccgaatggtgatagacgagcagcagagtccagacatcatc
ctgccgatccacagcctgaggaacgtccgagccatcgactacgacccgctggacaaacag
ctgtactggatcgactccaagcagaacgtcatccgccgcgctcaggaggacggaaaccag
agtatgacggtggtgtcaagctctctgggcggacccagtcagggtctgcagctgtacgac
ctgagcatcgacatctacagccgcttcatctactggaccagcgaggtcaccaacgtcatc
aacgtcacccggaccgacggccgcagagtcggggtggtgctgcgaggggagcacgacaag
cccagagccatcgtggtgaacccggagagagggtacatgtacttcaccaacctgctggag
cgttctccaaagatcgagcgggcggcgctggacggtaccgagcgggaggttttgttcttc
agcggtttggggaaacccgtcgcgctggccatcgataacgaggtggggaagctgttctgg
gtcgactcggacctgcgacgcatcgagagcagcgacctctccggagccaatcggatcgtg
atcgcagactccaacatcctgcagccggtgggtctgacggtgttcggaaaccacctgtac
tggatcgacaagcagcagcagatgatcgaacgcatcgacaagacgacgagggagggacgc
accaagatccaggctcgcgtcgcctacctgagtgacatccacgccgtccacgagctggac
atgaaggagtacagtaaacacccgtgtacctgggagaacggcggctgctctcacatctgc
atcgtgaagggagacgggacgactcgctgctcgtgtcccgtccacctggtgctgctgcag
gacgagctctcctgtggagagccccccacctgttccccggagcagttctcctgtacgtcc
ggggaggtggactgcatccctcaggcgtggaggtgcgacggttaccccgagtgtgacgac
agcagcgacgaggaggactgtcccgtctgctccgagtccgagttccagtgcgacagccgg
cagtgcatcgacctgagcctccgctgcaacggagagatcaactgtcaggaccggtccgac
gagaacaagtgtgaaggtgagacagtacgttgccctcctgaccagttcacctgctccaac
ggccagtgcatcgggaaacacaagaagtgcgaccacaacatggactgtaccgacaactcg
gacgagatcggctgctatccgacagaggagccgcctcctccgtccaacaacaccatcggc
tccatcgtgggcgtggtcatggcgctgttcgtggtgggcgcagtgtattttgtgtgtcag
cgcgtcctctgtccgcagatgaaggacgacggcgagacggtcaccaacgactttgtggtt
cacgggccgtcgtcggtgccgctgggatacgtgccgcatcccagctcgctgtccagctcg
ctgccaggtatgtccagaggcaagtctgtgattggctccctcagcatcatgggcgggagc
agcggccctccgtacgaccgcgctcacgtcaccggagcctcgtccagcagctcgtccagc
accaaggggacctacttccccccgatcctgaatcctcctccgtctcctgcgacagtccgc
tctcagtacaccgtggagtttggttactcgtccaacagtccctccacgcacagatcctac
agctaccggccctacacctaccgccagttcgccccccccactaccccctgcagcactgac
gtgtgcgacagcgactacacgccgggacgccgggcgcctctcaagtccagcgccgctgcc
tctgccgccgccaagggctacaccagcgacctcaactacgactcggagcctttcccgccg
ccgccgacgccccgcagccagtacctgtcggcggaggagaactgtgagagctgcccgccg
tcgccttacaccgagcgcagctactcccaccacctctacccgccgccgccgtcgccctgc
acggactcctcgtga
DBGET
integrated database retrieval system
