Siniperca chuatsi (mandarin fish): 122874085
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Entry
122874085 CDS
T08948
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122874085
Transcription factors [BR:
schu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
122874085
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
122874085
NCBI-ProteinID:
XP_044047578
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Position
LG1:15534663..15675170
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AA seq
801 aa
AA seq
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MEGFLRSSFLLSRVMSSKQATSPFASVVDGDDAMSQEHLSWEKEESAEAHGTPQLPLHSL
LHGKAHPDEMQPLSSVPPESDWDSLVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGAR
ERSDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDESSCMEKLLSKDWKEKME
RLNTSELLAEVKGTPESLAEKEHQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQ
MELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAA
QQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLANMQVSPGAKMP
PLPQPLNASGPISPSSLKNDKSSSSPITQVKEEGTQPLNLSARPKTTELVKSPTSPTQNL
FLGSKSSPNSLLSKGGIPSPLGGGLGRGSSLDILSSLNSTALFGDQDTVLKAIQEARKMR
EQIQREQLQHHQQGMEAKLSALSSVGLNNCRVDKERAHFESMGHHLGKLGEEGKIGHRVI
DLTRPEDLDGSKEVNGSADKPQPYYCWPTGGAGSTEARVFRETRGRNNNEPHIKRPMNAF
MVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQDKQPYYEEQARLSKLHLEKYPNY
KYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQPPQIPITTSASMVYPGAIT
LATTTPSPQMTSECSSASVSPEPSIPVIQSTYNMKLEPNTMANNSEPVNGEDEMDMYEDF
EDEPKSDYSSENDTQEPVSAN
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttcttcgtagcagctttttactgagcagagtcatgtcttccaagcaagcc
acgtctccttttgcctctgtggttgatggggatgatgccatgagtcaggagcacttgtct
tgggagaaagaggagagtgctgaggcccatggcacaccacagctgcccctgcacagtctg
ctgcatggaaaagcccatcctgatgaaatgcagccgctcagcagtgtaccgccagagagc
gattgggacagcctggtgtcagcacaacagcgtatggaatctgacagcaataaagtatgt
tccctgtactccttccggaacaattccacttccccacacaagccggaggagggggcccgg
gagcgaagtgacctgctgagtggatcagcgtttggaactccagagcgccgcaaaggaagc
ctggcagacgtagtggacacgctgaagcagaagaagctggaggagatgacaaagacagag
caagacgaatcctcatgcatggagaaacttctttctaaagactggaaagagaagatggag
aggctcaacaccagtgaactactggcggaagtgaaaggtactccagagagcctggcagaa
aaggaacaccagctctccacaatgatcacccagctgatcagcctgcgcgaacagcttctg
gctgcccacgacgaacagaagaagctcgccgcctcacaaatggagaaacagaggcagcaa
atggagttagctcgtcagcagcaggagcagattgcaagacaacagcagcagctactgcag
cagcagcacaaaatcaacctcctccagcaacagatccagcaggtccagggtcacatgcct
ccgctcatgatccccatttttccacacgaccagcgcactctggcagcagcagccgccgcc
cagcaaggctttctcttccctccgggaatgtcttataagccaggtgataactacccagtg
cagttcattccatccacaatggcagctgcagcagcgtcaggactcagccccctccagctt
cagcaactgtatgccgcccagcttgccaacatgcaggtctctcctggagccaagatgccg
ccactcccccagcccctcaatgctagtgggcccatttctccctcctctctgaagaatgac
aagagttcctccagccccatcactcaagtcaaggaggagggaacacagccgctcaacctg
tctgctcggccaaagacgacagaactggtcaagtcccccacatccccaacacaaaacctg
ttcctcggcagtaaaagcagccctaacagtctccttagcaagggtggtatccccagccca
cttggaggaggcctgggccggggctcatctctggatattctgtccagcttaaactctacc
gcgttgttcggggaccaggacacagtgctgaaggccatccaggaggctcggaaaatgagg
gagcagatccagagggaacagctgcaacatcaccagcagggcatggaggcaaagctgtcc
gccctcagttcagtgggcctcaacaactgcagagttgacaaggagagggcacatttcgag
agcatggggcaccacctcggcaagctgggtgaggaaggaaagattggccacagagttatt
gaccttaccaggccagaagatctagatgggtccaaggaagtaaatggctctgcagataaa
ccccaaccctattattgttggccaacaggaggtgctggatctactgaggcacgagtcttc
agggaaacccgaggaaggaacaacaacgaaccccacattaaaaggccaatgaacgcattc
atggtgtgggccaaggatgagcggcgcaagatcctccaggccttccccgacatgcacaat
tccaacataagcaagattttgggttctcggtggaagtccatgactaaccaggacaagcag
ccatactatgaggagcaggcccgcctgagtaagctccacctagagaagtacccaaactac
aagtacaagccacggcctaagaggacctgcattatcgatggaaaaaaactccgcattgga
gagtacaagcagatgatgcgctcacggcgacaagagatgaggcagttcttcactgtggga
cagccaccacagattcccatcaccaccagcgccagcatggtctatcctggggccatcacc
ttggcgaccaccacaccctcacctcagatgacatcagagtgctcgagtgcctcagtgagt
cctgagccatccattcctgtcattcagagcacctacaatatgaaactagagcccaatacc
atggcaaacaacagcgagccggtcaatggcgaggatgagatggacatgtacgaggatttt
gaggatgagcccaaatcagactatagtagtgaaaatgacactcaagagccagtcagtgcc
aactga
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