Siniperca chuatsi (mandarin fish): 122882822
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Entry
122882822 CDS
T08948
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03250
Viral life cycle - HIV-1
schu04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122882822 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
122882822 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schu03400
]
122882822 (samhd1)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
122882822 (samhd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
HD
HD_assoc_2
Sortilin-Vps10
Motif
Other DBs
NCBI-GeneID:
122882822
NCBI-ProteinID:
XP_044066553
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Position
LG10:18880413..18892005
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AA seq
624 aa
AA seq
DB search
MENRKRPFEAVLTPNDGFKTPEKRVSVVRLPDSDYMRWGVGETCRYLRSEGLGEWEDTFR
AQKITGVGLRYLKDADLEKIGIKYLGDRLQILHSLRKLWQIEAEPNKVFNDPIHGHVELH
PLLIKIIDTPQFQRLRNLKQLGGAYFVFPGASHNRFEHSIGVGYLAGRLVQSLNERQPEL
LISRRDILCVQIAGLCHDLGHGPFSHMFDGMFIPKARPGISWKHETASLAMFDYLVNDNG
LKPVMEQHGLVLPEDLDFIKEQIAGPLDTTAAQGQKWPYKGRPEDKSFLYEIVANKRNGI
DVDKWDYFARDCYHLGIQNNFDYHRFLKFARVCEVDGQKHICTRDKEVGNLYDMFHTRNC
LHRRAYQHKVGNIIETMITEAFLKADKHIQIKGSEGKVFTLSTAIDDMEAYTKLTDHMFE
QILNSPSPELAEARKILHNIICRRLYKCLGQTQADKTMIVTQDTIHCWEAHLARSIPQTG
AQDVSLQPEDFVVSVILMDYGMKEKNPINNVHFYCKDDLTTAIQIRKNQVSKLLPDQFAE
QLIRVYCKKTDDKSLEAAKKHFVQWCMDMNFSKPQDGDIIAPELTPLKASWSNNNEREDG
EGGNSREVNCAIVNGHKKAKTKLF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccgaaaacgaccgtttgaggcagttttgacgcctaatgacggcttcaaaacg
ccggagaagagagtgtcagtggtccggctgccggactcggactacatgagatggggagtg
ggcgaaacgtgtcggtacctgcgaagcgaaggtcttggagaatgggaagatacatttaga
gcccaaaaaatcacaggtgtcgggctgcggtatctaaaggatgcagatctggagaagatt
ggcataaagtaccttggtgaccggctgcagatcctacacagcctcaggaagctgtggcag
atagaagcagagccaaataaggtgtttaatgatcccatccacgggcatgtggagttgcac
cctcttctcatcaaaatcatcgacacccctcagttccagagactacgaaacctcaagcag
cttgggggggcctactttgtttttcctggagcatcccacaaccgctttgaacactcgatt
ggggtgggttacttagcaggacggcttgtacagtctctgaatgagaggcagccagaactc
ctcatctctcgcagagacatcctttgtgtgcagatcgctgggctctgccacgacctggga
catgggccattttcccatatgtttgatgggatgttcatccccaaagcacgtccgggaatt
tcctggaagcatgagactgcctctctagccatgtttgactacctggtgaatgacaatggc
ctgaagccagtgatggagcagcacggcctggtactgcccgaggacctggactttattaag
gaacagattgctggtccactggacactactgcagctcaaggccagaagtggccatataaa
ggccgtccagaagacaagtccttcctctacgaaattgtggccaacaaaagaaatggcatt
gatgtggacaagtgggactactttgccagggactgctaccacctgggcatccagaacaac
tttgactatcaccgcttcctaaagtttgccagggtgtgtgaggtggacgggcagaagcac
atctgcactagagacaaggaggtgggcaatctgtatgacatgttccacacaaggaactgt
ctccacagaagagcctaccagcacaaagtgggcaacatcatagagactatgatcacagag
gcctttttaaaagcagacaagcacatccagataaaaggctccgaagggaaggtgttcact
ctctccacagccatagatgacatggaggcctacaccaagctgacagatcatatgtttgaa
caaatactcaactccccatccccagagctggctgaggcaaggaagattctacacaacatc
atctgtcgacgcctctataagtgtctgggccaaacccaggcagacaaaaccatgattgta
actcaggacacaattcactgctgggaagcacatttggctcgatccatccctcagactggc
gcccaggatgtcagtctgcagccagaggactttgtagttagtgtaatattgatggactac
gggatgaaggaaaagaaccccatcaacaatgtgcacttttattgcaaggatgacctaacc
acagccatccagattcgcaagaaccaggtgtctaaacttcttccagaccagtttgctgag
cagctgatcagggtctactgcaagaaaacagatgacaagagtctggaggcagccaagaag
cactttgtccagtggtgcatggacatgaacttctcaaagcctcaggatggagacataata
gcacctgagctgactcctctgaaagccagctggtcgaacaacaacgaacgcgaggatggt
gaaggtggcaactccagagaagtaaactgtgctattgtaaatggacacaagaaagctaaa
actaagcttttttaa
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