Siniperca chuatsi (mandarin fish): 122887004
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Entry
122887004 CDS
T08948
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122887004
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122887004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-B_box
zf-RING_UBOX
zf-C3HC4
SPRY
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_10
zf-RING_5
zf-RING_6
MRP-S31
Motif
Other DBs
NCBI-GeneID:
122887004
NCBI-ProteinID:
XP_044075727
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Position
LG13:2633314..2635863
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AA seq
557 aa
AA seq
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MAQKGVQLDRETFSCAICVDLLKDPVTIPCGHSYCMNCIKTHWDEEDEKNIHSCPQCRQF
FIPRPVLLKNTMLAALVEELKKTGLQAAPADHCYAGPEDVACDICTGRKLKALKSCLVCL
ASYCDKHLQPHYDVAPLKKHKLVDPSKKLQENICSRHDEAMKMFCRTDQQCICYLCSVDE
HKGHDTVSAAAERTERQRELEVRRQNIQQRIQDRQKDVKLLQQEVEAINRSADKAVRDSE
KIFTELIRLMEKRSSDVKQQVRSQQETEVSRAKELQEKLEQEITELKRKDAELEQLSRTE
DHTQFLHSYPSLSRLIESTDSSSIDIRPLSYFEDVTAAVSEVRDKLQDVLSEKWTNISLT
VTEVDVLLSQPEPKTRAGVLKHSREITLDPNTAHTKMLLSEGNRKATVMREVQSYSSHPD
RFTGCCQVLSRQSLTGRCYWEVEWRGRGVSVAVTYKNISRSGRLNECGFGFNDKSWALYC
DNNSYNFWYNKVQTPVSGPWSSRVGVYLDHRAGILSFYSISETITLLHRVQTTFTQPLYA
GLQLFSSGATAEFCELK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaaaggagttcagctggaccgggaaaccttctcttgtgcgatctgtgtggat
ctactgaaggatccggtgactattccctgtggacacagctactgcatgaactgtattaaa
acccattgggatgaagaggatgagaagaacatccacagctgccctcagtgcaggcagttc
tttataccaaggcctgtcctgctgaaaaacaccatgttagcagctttagtggaggaactg
aagaagaccggactccaagctgctcctgctgatcactgctatgctggacctgaagatgtg
gcctgtgatatctgcactgggagaaaactgaaagccctcaagtcctgcctggtctgtctg
gcctcttactgtgacaaacacctccagcctcattacgatgtggctccattaaagaaacac
aagctggtggacccctccaagaagctccaggagaacatctgctctcgccatgatgaggcg
atgaagatgttctgccgtactgaccagcagtgtatctgttatctctgctctgtggatgaa
cataaaggccacgacacagtctcagctgcagcagaaaggactgagaggcagagagagctc
gaggtgaggcgacaaaacatccagcagagaatccaggacagacagaaagatgtgaagctg
cttcagcaggaggtggaggcgatcaatcgctctgctgataaagcagtgagggacagtgag
aagatcttcactgagctgatccgtctcatggagaaaagaagctctgatgtgaagcagcag
gtcagatcccagcaggaaactgaagtgagtcgagccaaagagcttcaggagaagctggag
caggagatcactgagctgaagaggaaagacgctgagctggagcagctctcacgcacagag
gatcacacccagtttctacacagctacccctcactgtcacgactcattgagtctacagac
tcatccagcatcgatatccgtcctctgagctactttgaggatgtgacagcggctgtgtca
gaggtcagagataaactacaggacgttctgagtgagaaatggacaaacatctcactgaca
gtgactgaagtggatgttttactgtcacaaccagagcccaagaccagagctggagtctta
aaacattcacgtgaaatcacactggatccaaacacagcacatacaaagatgttattatct
gaagggaacagaaaagcaacagtaatgagagaagttcagtcttattctagtcacccagac
agattcactggatgttgtcaggtcctgagtagacagagtctgactggacgttgttactgg
gaggtggagtggagagggagaggagtttctgtagcagtcacatacaagaatatcagcaga
tcagggaggctgaatgaatgtggatttggtttcaatgacaaatcttgggcgttatattgt
gacaacaacagttataacttttggtacaacaaagtccaaactcccgtctcaggtccttgg
tcctccagagtaggagtgtacctggatcacagggcaggtattctgtccttctacagcatc
tctgaaaccatcactctcctccacagagtccagaccacattcactcagcctctctatgct
ggacttcaacttttctcttctggagccactgctgagttctgtgaactcaaatag
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