Siniperca chuatsi (mandarin fish): 122887463
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Entry
122887463 CDS
T08948
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03030
DNA replication
schu03410
Base excision repair
schu03420
Nucleotide excision repair
schu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122887463 (lig1)
03410 Base excision repair
122887463 (lig1)
03420 Nucleotide excision repair
122887463 (lig1)
03430 Mismatch repair
122887463 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schu03032
]
122887463 (lig1)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122887463 (lig1)
Enzymes [BR:
schu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122887463 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
122887463 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
122887463 (lig1)
DNA replication proteins [BR:
schu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
122887463 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
122887463 (lig1)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
122887463 (lig1)
NER (nucleotide excision repair)
Other NER factors
122887463 (lig1)
MMR (mismatch excision repair)
Other MMR factors
122887463 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
122887463
NCBI-ProteinID:
XP_044076654
LinkDB
All DBs
Position
LG13:6348829..6397532
Genome browser
AA seq
1007 aa
AA seq
DB search
MQRSIASFFQPKSKDKDIQKKTTDEPVKKPAKSPLKVQNGVQKADSAIKKVAKRSRQILD
SDDDEAPAVKEQVTTNGQGDKEALGETEKKDDVFKAVPTPLSPPPAPATPVTPATPATPA
SSASPGTPSTPNSISPSGIVKRKTARKMFPKRKLDESRSGSESQKEEEQGQQNKRARVES
SASSAGNTGEPMEEGAKEERVEKAVTQANRPDEEVENKKKEEGEKAKEEERVERKNSDEK
EKKAEGAVKKNEAKEKTDDEKGPAVAKKEVVEKDTQEGEESPKSQTAKKQKEAKEQKDKE
PPKKAPISSFFAPRKAAVKTEKPEKHEGEKKMSAERKTSAEESEDTKGKSTSGQTDYDPS
RANYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSPDDLLC
CVYLCLNQLGPAHLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSN
QRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGK
LRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMGAESRRAWIEEKSLILKQTYCE
MPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKY
DGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKESVVSCVLDAEAVAWDREK
KQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLKESFSEV
EGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDY
LEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDENEEFQSICKIGTGFKDEDLEQHY
KFLKEHILPKPRAYYRVDQSAEPDVWLDAMQVWEVKCADLSLSPIYKAAMGMVDPEKGIS
LRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatcgcatccttttttcagcccaagagcaaggacaaggatattcagaag
aaaactacagatgaaccagtgaaaaaacctgccaaaagccctctcaaggtgcagaacggt
gtccagaaggctgattcagccatcaagaaggttgccaaacgcagccgtcagatcctggac
agcgacgatgacgaggcaccggccgttaaggagcaagtcactaccaatggacaaggagac
aaagaagctcttggtgaaacagaaaagaaggatgatgtgtttaaggcagttcccaccccc
ctgtctcctccacctgccccagctacacctgtaacccccgccactccagccaccccagcc
tcttcagcttcacctggcacccccagcaccccaaactccatatccccctctggaattgtt
aaacgcaagaccgcgaggaagatgttccccaagagaaagcttgatgagagcaggagcggc
agtgagagtcagaaagaggaggagcagggtcagcaaaacaaacgagcccgtgtggagagc
agtgccagcagcgcaggaaacaccggtgaacccatggaggagggagcaaaggaagaaaga
gttgaaaaggcagtgacccaggctaaccgcccagatgaggaggtggagaacaagaagaaa
gaggaaggagagaaggccaaggaggaggagcgggtggagagaaagaactctgatgagaaa
gaaaagaaagctgagggggcggtaaagaaaaatgaggcaaaggagaagacagatgatgag
aaagggcctgctgttgccaagaaggaggtggttgaaaaggacacgcaagagggagaagag
agcccaaaaagtcaaacggcaaaaaaacagaaagaagcaaaagagcagaaagataaggag
ccgcccaagaaagcccccatcagcagtttctttgcgccaagaaaagctgcagtgaagaca
gagaaaccagagaagcatgaaggagagaaaaagatgagtgcagagaggaagacttcagcg
gaagagagcgaagacacgaaaggtaagtcaacgtcaggacaaacggactacgatccatcc
agggccaactaccatcctgtggaccacgcctgctggaagcagggccaaaaagtgccgtac
ttggctgtggctcgcacctttgagaagattgaagaggactctggcagactaagaaacatt
gagacgctgtcgaacctgtttcgctccgtgctgctcctctctccagatgacctgctgtgc
tgtgtgtacctgtgtttgaaccagctgggtcctgcccacctggggatggagcttggcgtt
ggagaaacggtgctgatgaaagctgttgctcaagcaactgggcgacaattggacaaaatc
aaggcagaggcgcaggagaaaggagatttaggccttgtggccgagagttcccgtagcaac
cagcgcatgatgttccaaccggccagtctgacagcagggggcgtgttcaggaaattgaag
gaaatcgccagtatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggc
ctctttgtggcatgccgcttttccgaggcccgctacatagtcaggtccctggctgggaag
ctgaggataggcctggctgagcagagtgtcctatcagctctaagccaggctgtgtgcctg
actccccctggacaaggattccctcccgctgtgatcgacgcagggaaggggatgggcgct
gagagcaggcgggcctggatcgaagagaagagtctcattctcaaacagacctactgcgag
atgcccaattacgacgtcctgatccctgttctgttaaaagagggcatagaccagctaccc
aatcactgcaagctcactccaggtgtaccactgagacccatgttggctcaccccaccaag
ggtgttggcgaggtgatgaagaggtttgacgaggcagcgttcacctgcgagtacaaatac
gatggagagcgtgcacagattcacattttggagagtggtgaggttcgaatattcagccgc
aaccaggaagacaacaccagcaaataccctgatatcatctctcgcattcccaaggtgaag
aaggaatctgtggtatcctgtgtcctggatgcagaggcagtggcctgggatcgtgagaag
aaacagatccagcccttccaggtccttaccacccgtaagagaaaggacgtggatgcctcg
gagatcaaagtccaagtgtgcgtgtacgcctttgacctcctctatctcaacggcgagtca
ctggtgcgacagccgttgtgtcggcgtcgggctctgctgaaagaaagtttctcagaggtg
gaaggagagtttgtgttcgcccgatccatcgactccgacaacaccgacaccatcgccgag
ttcctggagcagtctgtccgagactcctgcgagggcctaatggtgaagactctggagaag
gatgccacctatgaaattgccaagcgctctcataactggctcaagctgaagaaggactac
ctggagggggtgggtgacacagtggacctgtgtgtgattggcgcttacctgggaaaaggc
aagaggacgggcacctatggaggcttcctgctggcctgctacgacgacgaaaacgaggag
ttccagtccatctgcaagatcgggacaggcttcaaggatgaagatctggagcagcattac
aagttcttaaaggagcacattctgcccaagccccgtgcctactaccgcgtcgaccaatca
gcagagcctgatgtgtggctggacgccatgcaggtttgggaggtgaagtgcgctgacctg
tcgctgtcgcccatctataaggctgccatgggaatggttgatccagaaaagggcatttcc
ctcaggttcccccgcttcctccggatcagagacgacaagaagcctgaggacgccacgacc
ggagcacagatcgctgatttgtacaagaagcagcagcagattcagaaccagggggagaaa
gctgacccggaggactactactga
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