Siniperca chuatsi (mandarin fish): 122888355
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Entry
122888355 CDS
T08948
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122888355 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122888355 (ddx46)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122888355 (ddx46)
Spliceosome [BR:
schu03041
]
Complex A
U2 snRNP components
U2 related factors
122888355 (ddx46)
Complex B
122888355 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
122888355
NCBI-ProteinID:
XP_044078649
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All DBs
Position
LG14:21061234..21078326
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AA seq
1093 aa
AA seq
DB search
MGRESRYARIIRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRSRRERSRSRDRRRSRSRD
RKRARKTTGNGVTRPNQETGRMFHLSKSNLMRSNRRSRSRERRRSRSRERRRSGSRTRVR
RSRSGSPGKSRRPDEKSRSKEKDSIDPLSEKKKIKEEKEDEKVEDQDFDQNKLEEEMRKR
KERVEKWREEQRKKAIENIGELKKELEEMKQGKKWSLEDDDDDEEDVSATMDGDDDEDGE
EKGELKEKEIKEEKIEEEEKETLMEQQAEDDDVDPLDAYMEEVKQEVKKFNMGAMRGNDK
KGAMTVTKVVTVVNTKKGPHTHKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRK
VLEPVDHGKIQYESYRKNFYVEVPELARMTPEEVNAYRLELEGIIVKGKGCPKPIKAWVQ
CGVSMKILGAMKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD
QRPLEESEGPISVIMTPTRELALQITKECKKFSKQLGLRVVCVYGGTGISEQIAELKRGA
EIIVCTPGRMIDMLGANSGRVTNLRRATYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQT
VMFSATFPRAMEALARRILAKPIEVQVGGRSVVCSDVEQHVLVIEEDKKFLKLLEILGHY
QEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLMVAT
SVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQVRYAGDIIK
ALELSGSPVPPELEQLWASFKDQQKAEGKTIKSSSGFSGKGFKFDETEHALANERKKLQK
AALGLQDSDDEDGALDIEEQIESMFNSKKRVKDLSAPGAATGPAGAGSATAAAPGGLPGL
GPTSAGNIQKLEMAKRLALKINAQKNLGAEAQDVMQQATNAILRGGTIMTPSVSAKTIAE
QLAEKINAKLNYTPVEKLEEERQAAEQAETIKRYEEELEINDFPQTARWKVTSKEALQRI
GEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANEMAVQKAKTEITRLIKEELIRLQN
SYQPTSKGRYKVL
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcgaggtatgccagaattatcagacactacaggaaacgttccgcgtct
cggggacggtcaggtagccgatctaagagtcgctccccggacaaacgctccaagaaagac
gaccgaagcaggcgggagcgttcacggagccgggaccgccgcaggtcccggtccagagac
agaaaacgagccagaaagacaacaggcaatggagtaacacgacccaaccaggaaacagga
aggatgttccacctctccaaatccaatctgatgcgttcaaacaggcgctccaggagcaga
gaaaggaggaggtccagaagcagagagaggaggaggtcgggcagcaggacccgagtccgg
aggtcccgatctgggagccccggcaagagcaggagaccagatgaaaagtcaaggagcaag
gagaaagacagcattgatcctttatctgaaaagaaaaagattaaagaggagaaagaggat
gagaaggttgaggatcaagactttgaccagaacaagctggaggaggagatgaggaagagg
aaggagcgtgtggagaagtggagggaagagcagaggaagaaggccatcgaaaacattgga
gagctcaagaaagaactggaggagatgaagcagggcaagaagtggagcctggaggatgac
gatgacgatgaggaagatgtttcagctacaatggatggagacgatgatgaagatggggaa
gagaagggtgagctgaaagagaaggagataaaagaggagaaaatagaggaggaggagaag
gagactctcatggagcagcaggccgaggacgacgacgtggatcctctggatgcctacatg
gaggaagtgaaacaggaggtgaagaagttcaacatgggagccatgagaggaaatgataag
aaaggagcaatgaccgtaaccaaagtggtgacagttgttaacaccaagaaaggacctcac
actcacaagaagaagggtgagctgatggagaatgaccaggatgctatggaatactcatca
gaggaggaggaggttgatctgcagactgctctgacgggcttccagaccaaacagaggaaa
gtcctagagccagttgaccacgggaagatccagtacgagtcgtatcgcaaaaacttctat
gtggaggtccctgagctcgccaggatgactccggaagaagtgaatgcgtacaggctggaa
ctggaaggcattatcgttaaagggaagggctgtcccaaacccatcaaggcctgggtgcag
tgtggggtgtctatgaagatcctcggtgctatgaagaagcacggctacgagaagcccacc
cccatccaggcccaggccatacctgccatcatgtcgggccgagacctcattggcatcgct
aagaccggcagcgggaaaaccatagccttcctgctgcccatgttccgacatatcatggac
cagaggcccctggaggaatccgagggaccaatttctgtaatcatgactccgaccagagag
ttggctctgcagatcaccaaggagtgtaagaagttctccaaacagctgggactcagggtg
gtgtgtgtttatggaggcacggggatcagcgaacagattgctgagctgaagagaggagct
gagatcatcgtgtgcacaccgggaagaatgattgacatgttgggggccaatagcggtcga
gtcaccaacctacgcagagctacatatgtggtgttggatgaagcagacaggatgtttgac
atgggcttcgagccacaggtgatgcgtattgtggacaacgtgcgtccagaccgtcagacg
gtgatgttttcggctaccttccctagagccatggaggcgctggctcgtaggatcctggcc
aagcccattgaggtccaggtgggaggccgcagtgtcgtctgctctgatgtggagcaacac
gtgctggtgattgaggaggacaagaagttcctgaagctgctggagattctgggtcactac
caggagaagggctcggtcatcatctttgtggacaagcaggagcatgcagacggactgctc
aaagacctgatgaaagcctcgtacccctgcatgtcactgcacggaggaattgaccaatac
gacagagacagcatcatcaatgactttaagaatggagcatgtcgtctgatggtggccacc
tctgtggcagccagaggcctggacgtcaagcagctgatcctggtggtcaactacaactgt
cccaaccactacgaggactacgtccacagagccggacgcacaggccgagcaggcaacaag
ggctacgcctacaccttcatcacagaggatcaggttcgctatgctggggatatcatcaaa
gccttggagctgtccggctctcctgtcccacctgaactggagcagctttgggcctccttc
aaagaccaacagaaagcggagggtaagaccattaagagtagcagtggcttctcaggaaaa
ggctttaagtttgacgagaccgaacacgccttggccaatgagagaaagaagctgcagaaa
gctgctcttggactgcaggactccgatgatgaggatggagccctggacattgaggagcaa
atcgagagcatgttcaactccaagaagagggtgaaggatctgtctgctcctggggcggcc
accggtcctgcaggagcaggttcggccacagcagccgcccccggagggctgccaggcctc
ggacccacgtctgctggaaacatccagaaactggaaatggccaagaggctggcgctcaag
atcaacgctcagaagaacctgggcgccgaggctcaggacgtgatgcagcaggccactaat
gccatcctgcggggcggcaccatcatgacaccctcggtgtcagccaagaccatcgcagag
cagctggcggagaaaatcaatgccaagctgaactacacccccgtggagaagctggaggag
gagcggcaggcggctgaacaggccgagaccatcaagagatacgaagaggagctggagatc
aacgacttccctcagacggccaggtggaaggtgacatctaaagaagctctgcagaggatc
ggtgaatactctgaagccgccatcaccatcagaggaacctatttccctccaggcaaagag
cccaaggagggagaacgcaagatctacctggctattgaaagtgcaaatgaaatggctgtg
cagaaagccaaaacggagattactcggctaatcaaggaagagctaatcagattacaaaat
tcctaccagccgacgagcaaaggccggtacaaagtgttgtag
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