Candidatus Sumerlaea chitinivorans: BRCON_2700
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Entry
BRCON_2700 CDS
T09023
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
schv
Candidatus Sumerlaea chitinivorans
Pathway
schv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
schv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRCON_2700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schv03400
]
BRCON_2700
Enzymes [BR:
schv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BRCON_2700
DNA repair and recombination proteins [BR:
schv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BRCON_2700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_22
DUF6139
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AXA37442
UniProt:
A0A2Z4YA03
LinkDB
All DBs
Position
complement(3046780..3050550)
Genome browser
AA seq
1256 aa
AA seq
DB search
MPTLNDILLQSIRETQSYRRLVRELERAKPGRAVSMKGLRAGALAGLTAALAHVGSRSNV
PANAERSARTTEEAGHLSKLASRTASHESGAVGRDSATHRPSLIVLVTANVERAAELADE
VAFFGLPQVFHYPKSQLLPYEPDEPYLEEQVKHLEFFHHLASLGEKPRRPDITDHPASVC
VTSIEALFARVAPLEMVRKHRIEIQWGQPFDTQAFAQWATELGYERVPTVEARGEFSIRG
GIVDIFPLHTEHALRIDLFGLEIESIRWFDVHTQRSLRQLGELESVTILPARERVLIEAA
LATAPLSLHDSNAAEDHVSGDGTSDNQGGRTPSELPLVQLLDLLPPDALLVFDNAELYPL
LDERFRQVRERQYREYSARSDHLPAPSILYADLQQVMSRASQFVQIHHTLLAETPATISI
ETHSFETMPPSFEKYLTEFRKRLAEEFRVAVVCDNLGQAERLKELLVENDVGVVIIPDPC
VAPEEIEDAALRQTVRRVVEASPLERLPEVILTTGLLHNGFVMPEAGLYVVTDREIFGRY
RRRPVYRKLYKGTPIPDVRQIQKGDYVVHLEHGIGRFEGIRTQQVDGKVCDFLELTYADD
DKLLVPVEKIAFVHKYSAPEQGEIHLDKLGTKNWTRRRRKSQEAVEKLAKELLQLYARRA
AAKGYAFGPDTAEQREFEAAFLYTETPDQLRAIEEVKRDMCEPKPMDRLICGDVGFGKTE
VAIRAAFKAIQEGKQVALLCPTTILAQQHYNTFRERFADYPIRVEMLSRFKTTKETKEIL
AGLKSGIVNMVVGTHALLSKSVQFRDLGLVIVDEEQRFGVKQKERLKELRASVDFLTLTA
TPIPRTLYMALSGLRDMSLIATPPADRHPVKTRIIHFDAEQIEEAILRELNRGGQVFFVH
NRVHNIHEVARRLQEIVPSARIAIAHGQMPDGELEQVMMDFIDGKYDVLVSTTIIENGLD
IPNVNTIIINRADAFGLAQLYQLRGRVGRENRQAYAYLVVPQGQPITESAVARLAAIEEF
VELGSGFNIAMRDLEIRGAGNLLGREQHGTMADVGFELYCKMLEEAVEALTGSLREEELE
TEIQWSTNAYLPASYIPVEGQRFMVYKRIAEATTLAQLDAITEELRDRYGEVEISRDDGT
VVSTLPQPVVNLMSIAKLRILGRKLSIRKIAATRHGFEIHRPDAVNELGPTIRKLLRSEG
PKVFVNNPNSLEFHYDDWAHRPQLEEAVAMLKQVLNEFTRAQPRSAGDEISAAVPV
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgcccactctgaacgacatacttttgcagtcgattcgcgagactcagagctatcggcgg
cttgtgcgtgagcttgagcgagcaaagcccgggcgcgccgtgagtatgaaagggttgcga
gccggggctctggctggcctgacggcggcccttgcgcacgtcggttcgagatcaaatgtt
ccggccaacgctgaacggagcgctcgaacaaccgaggaagccgggcacctttcgaaattg
gccagtcgcactgcctcccacgagagtggggctgttggcagggactccgcaacgcaccgt
ccctcgctcattgtcctcgttacggcgaatgttgagcgcgccgcagagcttgcggacgaa
gttgcgttctttgggttgccccaagtctttcactaccccaagtcgcaacttctaccttat
gagcccgatgaaccctatctcgaggagcaagtcaaacatctggagttctttcatcatttg
gcatcgttgggagagaaaccgcgtcgccctgatatcactgaccaccctgccagtgtgtgc
gtgacttctatcgaagccctgtttgcccgggtcgcccctctggaaatggtgcggaaacac
cgcattgagattcaatggggtcaaccgtttgacactcaggcgtttgctcagtgggcaact
gaactcggttacgagcgcgtaccgacggtggaggcgcgtggggagttctccattcggggc
ggaattgtggatatttttccgctgcacaccgaacatgctctacgtattgatctgtttggt
ctcgaaatcgagagcattcgctggtttgacgtccacacccagcgctccttacgccaactg
ggggagctggagtcagttaccattttacctgcacgagaacgggtcctcatcgaggccgct
ctcgcgacagcccctctgagtttacacgactcgaatgcggctgaagaccacgtttcggga
gatgggacaagtgataaccaaggggggcgcacgccaagcgagctacccttggtacaactt
ttggatctgctgccccctgatgcgcttctggttttcgataacgcagaactttatcccttg
ttggatgagcgcttccgccaagtaagagagcggcaatatcgggagtattccgctcgcagc
gatcatttgcccgcgccttcgatcctctatgcggatcttcagcaagtgatgagtcgggcc
tcgcaatttgtgcagattcatcacactttgttagctgagaccccggccacgatctcgatc
gaaacccattcattcgagacgatgccgccctcgttcgagaaatatctgactgagtttcga
aagcgcctcgccgaggagtttcgagtggcggtcgtctgtgacaatctcggacaggctgaa
cgacttaaggaacttctcgtcgaaaatgacgtgggggtcgtcatcatccctgacccctgt
gttgctccggaggagattgaagatgcagcgttgcgtcagaccgttcggcgagtggtggaa
gcatcgccccttgagcggctccctgaggttattctgacgacgggtctgctccacaatggc
ttcgtaatgcccgaagcaggcctctatgtggtgaccgatcgagagatcttcggtcggtat
cgccgccgccctgtctaccgcaaactctataaaggcacccctattcccgacgtgcgccag
attcaaaaaggtgactacgtcgtgcatctcgaacacggcatcggccgcttcgaaggcatc
cggactcagcaggtggacggtaaggtttgcgacttccttgagcttacctatgccgacgat
gacaagctccttgtccccgtcgaaaagatcgccttcgtccacaaatactctgcccccgag
cagggggaaatccatcttgacaaacttgggacgaagaactggacacggcgacggcgcaaa
agtcaggaagccgttgagaaactcgctaaagaattactccagctctatgctcgacgtgcg
gctgcaaaaggctatgcctttggcccagacacagccgaacaacgggagttcgaagcggca
ttcctttatactgagacccccgatcagttgcgcgccatcgaagaagttaagcgggatatg
tgcgagccgaagcccatggaccgcctaatctgtggtgacgtcggcttcggcaagacggaa
gtcgccattcgcgccgccttcaaagccattcaagagggcaagcaagtggcgcttctctgc
cccaccaccatccttgcccaacaacattataacacgttccgggaacgttttgccgactat
ccgatccgggtcgaaatgctctcgcgcttcaaaaccaccaaggagacgaaagagattctt
gcggggcttaagtcgggaatcgtgaacatggtcgtgggaacgcacgcccttctttcaaag
agcgttcagtttcgcgatttgggattggtaatcgtggacgaagagcagcggttcggggtg
aagcagaaggagcggctcaaggaactgcgagcaagcgtcgatttcctgacgctaacggca
accccgattccgcgtacgctgtacatggcactgagtggtctgcgcgatatgagcctgatt
gcgacaccgcccgccgaccgacaccccgtgaagactcggatcattcacttcgacgccgag
cagatcgaagaagcaattctgcgtgaactcaatcgcggcggacaagtgttcttcgttcac
aatcgtgtgcacaacatccatgaagttgcgcgacgccttcaggaaattgtgccctctgcg
cgcattgcaatcgcccacggacaaatgcccgatggcgagcttgaacaggtgatgatggat
tttatcgatggcaagtacgacgtgctcgtctcgacaacgatcatcgagaacggcctcgac
atcccgaatgtgaacaccatcatcatcaaccgcgccgatgcatttggtttggcccagctt
taccaactgcgcggtcgggtgggccgggaaaatcgtcaggcctatgcctacctcgtggtg
ccccaaggccagccgattacagaatcggccgtagcacggctcgccgccattgaagagttc
gtggagcttggcagcggtttcaatatcgcgatgcgggatctcgagatccggggggctggg
aatctgctgggacgcgagcaacacggcacgatggcagacgttgggtttgagctctactgc
aaaatgctcgaagaagccgtggaggctctcacgggttcactccgcgaggaagaactggaa
acggaaatccagtggtccacaaacgcctacctgcccgcttcctacattccggtggaaggc
cagcgcttcatggtttacaagcggattgccgaggcaaccacccttgcacagcttgatgca
atcacggaagaactacgagatcgctacggcgaagtggaaatttcgcgcgacgacggaact
gtggtaagtacgcttccccaaccagtggtcaacctcatgtcgatcgcaaaacttcggatt
ctcggccggaaactctcgattcgcaagatcgcagcgacccgtcacggcttcgagatccac
cgacccgatgccgtaaacgaactggggccaaccattcgtaaactcttgcgtagcgagggc
ccgaaagtgtttgtgaacaacccgaactcacttgaatttcactacgacgattgggctcac
cgcccacagctcgaagaagctgtggcaatgctgaagcaggtgctcaacgagttcacaaga
gctcagcctcgcagtgcgggtgacgaaatatccgcagccgtgcctgtctaa
DBGET
integrated database retrieval system
