Streptomyces cinereoruber: CP977_13960
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Entry
CP977_13960 CDS
T07115
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scin
Streptomyces cinereoruber
Pathway
scin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP977_13960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scin03400
]
CP977_13960 (mfd)
Enzymes [BR:
scin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP977_13960 (mfd)
DNA repair and recombination proteins [BR:
scin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP977_13960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEV33133
UniProt:
A0A5J6ISC8
LinkDB
All DBs
Position
complement(3162084..3165617)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAVKAAADGNRPHVDLVGPAAARPFAVAALARDSGRPVLAVTA
TGREAEDLAAALRSLLDPDTVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRDDDP
AAGPVSVVVAPVRSVLQPQVKGLGDLEPVALRSGQTADLNEVVEGLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDSVRERAAALAVEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLRGIADVRERARELGMP
WWSVSPFAADEADTDGDVLALGMHAPESYRGDTARALADTKGWLAEGWRTVYVTEAHGPA
SRTVEVLGGEGIAARLDPDLTDIAPSVVHVACGSIDHGFVDPGLKLAVLTETDLSGQKAA
GKDGQRMPAKRRKTIDPLTLEAGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFAPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVKVRALSRFQSDTESK
ATLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVF
YIHNRVDSIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGG
AEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDISAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLYPRTVIKPAV
HQILVPRPTTGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacgccgccctcgccgaggcggtg
aaggccgccgccgacggcaaccggccccacgtggacctggtcgggccggccgccgcgcgc
cccttcgccgtggccgcgctcgcccgggactcgggccgcccggtgctcgcggtcaccgcg
accggccgggaggccgaggacctggccgccgcgctgcgctcgctcctcgaccccgacacc
gtcgccgagtacccctcctgggagaccctgccgcacgagcgcctctcaccccgctccgac
accgtcggccgccgcctcgccgtgctgcgccgcctcgcgcacccgagggacgacgacccg
gcggccggcccggtcagcgtggtcgtcgcgcccgtccgctcggtcctccagccgcaggtc
aagggcctgggagacctggaaccggtggcgctgcggtcggggcagacggccgatctgaac
gaggtcgtggagggcctggcggccgccgcgtactcccgggtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgaggagcacccg
ctccggatcgagttctggggcgacgacgtcgaggagatccgttacttcaaggtggccgac
cagcggtccctggaggtcgccgagcacggcctgtgggcgccgccctgccgcgaactgctg
ctcaccgactccgtacgggagcgggcggcggccctcgccgtggagcacccggagctgggc
gagctcctgaacaagatcgcggaggggatcgcggtcgagggcatggagtccctggcgccc
gtcctcgtggacgacatggagctgctgctcgacgtgctgcccgcaggctccatggccgtg
gtctgcgaccccgagcgggtacggacccgggcggccgacctggtcgccaccagccaggag
ttcctccaggcctcctgggcggcgaccgccggcggcggcgaggccccgatcgacgtcggc
gccgcctccctgcggggcatcgcggacgtccgcgaacgggcccgcgagctgggcatgccc
tggtggtcggtgtcgccgttcgcggccgacgaggccgacaccgacggcgacgtcctcgcc
ctcggcatgcacgcccccgagtcgtaccggggcgacaccgcccgcgcgctcgccgacacc
aagggctggctggccgagggctggcgcacggtctacgtgacggaggcccacggccccgcc
tcccgtacggtcgaggtcctgggcggcgagggcatcgccgcccgcctcgaccccgacctc
accgacatcgcgccctcggtcgtccacgtggcctgcggctccatcgaccacggcttcgtg
gacccgggcctgaagctggccgtgctcaccgagaccgacctgtccgggcagaaggcggcc
ggcaaggacgggcagcggatgcccgccaagcggcgcaagacgatcgacccgctgaccctg
gaggccggcgactacatcgtgcacgagcagcacggcgtcggccggtacgtcgagatggtc
cagcggaccgtgcagggcgccacccgcgagtacctgctcgtggagtacgcgcccgcgaag
cgcggccagcccggcgaccggctctacatcccgaccgaccagctggagcaggtcaccaag
tacgtgggcggcgaggcgccgaccctgcaccggctcggcggcgcggactggacgaagacc
aaggcgcgcgccaagaaggccgtcaaggagatcgcggccgacctgatcaagctgtactcg
gcgcggatggcggcccccggccacgccttcgcccccgacaccccctggcagcgcgagctg
gaggacgccttcccgtacgcggagacgcccgaccagctgtccaccatcgccgaggtgaag
gaggacatggagaagaccgtccccatggaccgcctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtccgggcggccttcaaggcggtccaggacggcaagcaggtcgcg
gtcctcgtgccgacgaccctgctcgtgcagcagcacttcgggaccttctccgagcggtac
tcgcagttcccggtgaaggtgcgggccctgtcccgcttccagtcggacaccgagtccaag
gcgaccctggaggggctgcgggacggctcggtggacatcgtcatcggcacccaccgcctc
ttctcctccgagacgaagttcaaggacctcggcctggtcatcgtggacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctgaagaagctccgggccaacgtcgacgtcctcacc
atgtccgccacccccatcccccgtacgctcgaaatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcggcacccggtcctcaccttcgtcggcccgtac
gaggagaagcagatcggcgccgcgatccggcgcgaactcctgcgcgagggccaggtcttc
tacatccacaaccgggtcgactccatcgaccgggcggcggcgcggctgcgcgagatcgtg
ccagaggcccggatcgcgaccgcccacggccagatgtcggagcaggccctggagcaggtc
gtggtcgacttctgggagaagaagttcgacgtgctggtgtccacgacgatcgtggagtcc
ggcatcgacatctccaacgccaacaccctcatcgtggagcgcggcgacaacttcgggttg
tcgcagctccaccagctgcgcggccgggtcggccggggtcgcgagcgggggtacgcgtac
ttcctgtacccgccggagaagccgctgacggagaccgcgcacgaacgtctcgcgacgatc
gcccagcacaccgagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgg
ggcgcgggcaacctgctgggcggcgagcagtccggccacatcgcgggcgtcggcttcgac
ctgtacgtacggatggtcggcgaggcggtcgcggactaccgggcctcgctcgaaggcggc
gcggaggaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtgccg
cacgactacgcgccgggcgagcggctgcgcctccaggcctaccgggcgatcgcctccgcc
aactcggaggaggacatcagcgccgtacgcgaggagctgaccgaccgctacggcaagctg
cccgagccggtggagaacctgctcctggtggcggggctgcggatgctggcccgcgcctgc
ggggtcggcgagatcgtcctccagggcccgaacatccgcttcgccccggtcgagctgcgc
gagtcccaggaactgcgcctcaagcgcctgtacccgcgcacggtcatcaagccggccgtc
caccagatcctcgtcccgcgcccgacgacgggcaagatcggcggcaagccggtggtgggc
cgcgaactgctcgcgtggacgggggagttcctgacgacgatcctggggtcgtga
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