Streptomyces cinnabarinus: STRCI_003475
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Entry
STRCI_003475 CDS
T08957
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scir
Streptomyces cinnabarinus
Pathway
scir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STRCI_003475 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scir03400
]
STRCI_003475 (mfd)
Enzymes [BR:
scir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STRCI_003475 (mfd)
DNA repair and recombination proteins [BR:
scir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
STRCI_003475 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WAZ22237
LinkDB
All DBs
Position
complement(3875221..3878751)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAITAAADGNRMHVDLVGPPAARPFAVAALAREAGRTVLAVTA
TGREAEDLAAALRTLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGRTADLNTIVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEDVRARARALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAL
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADLELEADTLQLGMHAPETYRGDTAKALADTKGWLADGWRAVYVTEAHGPAA
RTVEVLGGEGIAARLDADLTALSPSVVHVACGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFAADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQAAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQSDTEAKA
VLEGLKEGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEEDIKAVREELVDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAVH
QVLVPRPKTAKVGGKPLVGRELLGWVGEFLASILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacaccgccctcgcggaagcgatc
accgctgccgccgacggcaaccgcatgcacgtcgacctcgtcggccccccggcggcccgc
cccttcgcggtcgccgccctggcccgcgaggccggccgcacggtgctggcggtgacggcg
accggccgggaggccgaggacctggcggccgccctgcgcaccctcctcccgccggagggc
gtcgtcgagtacccctcctgggagaccctcccgcacgagcgcctcagcccccgcagcgac
accgtcggccgtcgcctcgccgtcctgcggcggcttgcccacccgcgccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcccccgtgcgctcggtcctccagccgcaggtc
aagggcctcggcgacctggaaccggtcgccctgcgcaccggccggaccgccgacctgaac
accatcgtggaggccctggccgccgccgcgtactcccgagtcgagctggtcgagaagcgc
ggcgagttcgccgtacgcggcggcatcctcgatgtgttcccgccgaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaagtcgccgagcacggcctgtgggcgccgccctgccgcgagctgctg
ctcaccgaggacgtccgggcacgcgcgcgtgccctcgccgaagcgcacccggagctcggc
gagctgctcggcaagatcgccgaggggatcgccgtggagggcatggaatccctggcgccg
gttctcgtcgacgacatggagctgctgctcgacgtcctgcccaagggcgccatggccctg
gtctgcgacccggagcgggtacgcacgcgtgccgccgatctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgcggacgtccgcgaccgcgcgcgcgagctggacatgatg
tggtggtcggtgtcgccgttcgcggcggacctcgaactggaggcggacaccctccagctg
ggcatgcacgcgcccgagacctaccgcggggacaccgccaaggcgctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtctacgtcaccgaggcccacggccccgcggcc
cgcaccgtcgaggtgctcggcggcgagggcatcgccgcccgcctggacgccgacctgacc
gcgctcagcccatccgtcgtccatgtggcgtgcggctcgatcgactacggcttcgtcgac
ccggcactgaagctcgccgtcctcaccgagaccgacctgtccgggcagaaggcggccggc
aaggacggcgcccgcatgcccgcgcggcgccgcaagaccatcgacccgctcacgctggag
tccggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtccag
cggaccgtgcagggcgccacgcgcgagtacctcgtcgtggagtacgcccccgccaagcgc
ggccagcccggtgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcgcccacgctgcaccgcctgggcggcgcggactggacgaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctgtacagcgcg
cggatggcggcgcccggccacaccttcgcggccgacacgccctggcagcgcgagctggag
gacgccttcccctacgcggagaccccggaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccggctgatctgcggcgatgtcggctacggcaag
acggagatcgcggtccgggccgccttcaaggccgtgcaggacggcaagcaggcagccgtg
ctggtgccgacgaccctgctggtgcagcagcacttcgggacgttctccgagcggtactcc
cagttcccggtcaacgtccgcgcgctcagccgcttccagtcggacaccgaggcgaaggcg
gtcctggaggggctgaaggagggctccgtggacgtcgtcatcggcacccaccggctgttc
tcctcggagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtggacgtgctgacgatg
tccgcgacgccgatcccgcggaccctggagatggcggtgacgggcatccgcgagatgtcc
acgatcaccaccccgccggaggagcgccacccggtcctgaccttcgtcggcccctacgag
gagaagcagatcggcgccgccatccgccgtgaactcctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtcgatcgaccgcgcggccgcccggctccgcgagatcgtcccc
gaggcgcggatcgcgaccgcccacggccagatgtcggagtcggcgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtcctggtctccacgacgatcgtcgagtcgggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgcggccgcgtcggccgtggccgcgagcgcggttacgcctacttc
ctgtacccgccggagaagccgctcacggagaccgcgcacgagcgtctggcgaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtcgcgatgaaggacctggagatccgcggc
gcgggcaacctcctgggcggtgagcagtccggccatatcgcgggcgtcggcttcgacctg
tacgtccggatggtcggcgaggcggtggcggactaccgcgcgtccctggagggcggcgtg
gaggaggagccgccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccgcac
gactacgccccgggcgagcggctgcgcctccaggcctaccgctccatcgcctccgccaac
accgaggaggacatcaaggccgtacgcgaggaactcgtcgaccgctacggcaagttgccc
gagccggtggagaacctcctcctcgtcgcgggcctgcgcatgctggcacgcgcgtgcggg
gtcggcgagatcgtcctgcagggcaccaacatccgcttcgccccggtggagctgcgcgag
tcccaggaactccgcctcaagcgcctgtaccccggcacggtcatcaagccggcggtccac
caggtgctggtcccccgcccgaagacggcgaaggtcggcggcaagccgctggtcggacgg
gaactgctgggctgggtgggggagttcctggcgtcgatcctggggtcgtag
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