Sorangium cellulosum So ce56: sce3523
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Entry
sce3523 CDS
T00634
Name
(GenBank) unnamed protein product; High confidence in function and specificity
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scl
Sorangium cellulosum So ce56
Pathway
scl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
sce3523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scl03400
]
sce3523
Enzymes [BR:
scl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
sce3523
DNA repair and recombination proteins [BR:
scl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
sce3523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Rng_hyd_C
HCV_NS5a_1a
Motif
Other DBs
NCBI-ProteinID:
CAN93683
UniProt:
A9GRV1
LinkDB
All DBs
Position
complement(4924177..4926465)
Genome browser
AA seq
762 aa
AA seq
DB search
MSSSAGRATAWERETTGRRRCHCGIGIAFSTKRDGGTMMAGQRQAQGAARRTRAVRPATL
TARRKRGETAADLDSQRSSAATGEADSTAAIPRPTLTYADALEGARKGPFPGEIEPQLAT
LVTGPPPGEGWLYEVKLDGYRMLAKLRGGRVTLQTRRGQDWTERFAAVRDDLARLPAREA
VLDGEIVVVRPDGVTDFQALQNALSDGNGRREGRLMYFVFDLLYLDGRDLRGCTQVTRKR
ALEALLAEAPEEGHLRYTEHVAEDGSAVVQHACELGIEGVIAKRPEAPYRSGRGDSWLKV
KCGRRQEFVIVGFTEPSGARKGLGAILVGVNRSGKLAYAGKVGTGFTGKTLTTLRSRLDA
IVRATPACSGAPRMRGARWVEPRLVAEVRFSEWTRDGRLRHPSFEGLREDRTPESVTVER
EQPPPQSPPGEAAGAAPSRAAGAPPRRTASTAGGKSPRGGRSRGAAERVEVAGVPLTNPD
KVLYPAQGITKLALARYYEQIAEHMLTHAEKRLLTLVRCPAGQGKPCFFQRHEAEGLSQA
IQRMAVEEDDGERTYLYIETTEGLVSLVQMGALEVHLWGSRVDRIEQPDRMVFDLDPAPD
LPWERVADAARTARRLLSSLGLRSFVKTTGGKGLHVVVPIAPRRGWDEVKAFTKAVADAL
VRSDPARYTATMSKAKRAGKVFVDYLRNGRGATAVAPYSTRARPGAAVATPLSWDELDAP
LDPASFTIDTVPQRLAAIRDPWAELTSVRQSITSAMLKQVEL
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagctcagccggccgcgccacggcctgggaacgggaaaccaccggaaggcgacga
tgccattgcggtatcggaattgctttttccaccaaaagagacggtggcacgatgatggcc
ggacaaagacaggcacaaggcgcggcgcggcggactcgagcggtgcgaccagcaaccctg
accgcccgtcgcaaacgcggggaaacggcggctgacctggacagccagcgctcgtccgcg
gcgacgggagaggccgactccaccgcagcgatcccgcgcccgacgctgacctacgcggat
gcgctcgagggcgcccggaaagggccgttcccgggcgagatcgagccccagctcgcgacg
ctcgtcaccgggccacccccgggcgaggggtggctctacgaggtcaagctcgatgggtat
cgcatgctcgcgaagctccgcgggggccgcgtgacgctccagacccgccgcggccaggac
tggaccgagcggttcgcggccgtgcgcgacgacctcgcccggctgcctgcgcgggaggcc
gtgctggacggcgagatcgtcgtcgtgaggccggacggcgtgaccgacttccaggccctc
cagaacgcgctcagcgacgggaatggcaggcgcgaggggcgcctgatgtacttcgtcttc
gacctgctctacctcgacggccgcgatctccgcgggtgcacacaggtcacccgcaagcgg
gcgctcgaggcgctgctcgcggaagcgcccgaggaagggcacctgcgctacacggagcac
gtcgcggaggacggctccgccgtcgtccagcacgcgtgcgagctcgggatcgagggcgtc
atcgcgaagcgcccggaggctccctaccggagcgggcgcggcgacagctggctcaaggtg
aagtgcggccggcgccaggagttcgtgatcgtcggcttcaccgagccgtccggcgcccgg
aaagggctgggggcgatcctcgtcggcgtgaacaggtcaggcaagctcgcctacgccggc
aaggtgggcacgggcttcacgggcaagacgctgacgaccctgcgcagccgcctcgacgcg
atcgtacgcgccacgccagcctgttcaggggcgccgcgcatgcggggggcgcgctgggtc
gagcccaggctcgtcgcggaggtccgcttttccgagtggacgcgcgacggacggctgcga
cacccctccttcgaagggctccgcgaggaccgcaccccggagtcggtcaccgtcgagcgc
gaacagccgccgccgcaatcgccgcccggcgaggcagcgggcgcggcgccgagcagagcg
gccggcgccccgccgaggaggaccgcgagcacggcggggggcaagtccccgcgcgggggc
cggagcagaggcgccgcggagcgggtcgaagtcgccggggtgccgctgacgaaccccgac
aaggtgctctatcccgcgcaggggatcacgaagctcgcgctggcccggtattacgagcag
atcgccgagcacatgctgacccacgccgagaagcggctgctcacgctggtccgctgcccc
gcaggccagggcaagccatgcttctttcaaaggcacgaggccgaggggctgtcccaggcg
atccagcggatggccgtcgaggaggacgacggcgagcgcacctatctctatatcgagacc
accgaagggctcgtgtcgctcgtccagatgggggcgctcgaggtgcacctctgggggagc
cgcgtggaccggatcgagcagcccgacaggatggtgttcgacctcgatccagcgccggat
ctcccgtgggagcgcgtggcggacgcggcgaggacggcgcggcgcctcctttcgtcgctc
gggctgcggagcttcgtcaagacgaccggcggcaagggcttgcacgtcgtggtcccgata
gcgccacgcaggggctgggacgaggtgaaggcgttcacgaaggccgtggccgacgcgctc
gtgcgctccgacccggcgcggtacaccgcgacgatgtcgaaggcgaagcgcgccggcaag
gtcttcgtcgactacctgcggaacgggcgcggcgccaccgctgtggcgccctactcgacg
cgagcgcgtcccggcgcggccgtcgcgacgccgctctcgtgggacgagctcgacgcgccg
ctcgatcccgcctcgttcaccatcgacaccgtgccgcagcggctcgccgcgatccgggac
ccatgggcagagctcacgagcgtgcgccagtcgatcaccagcgcgatgctgaaacaggtc
gagctttga
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