Streptomyces clavuligerus: BB341_17235
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Entry
BB341_17235 CDS
T04717
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sclf
Streptomyces clavuligerus
Pathway
sclf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sclf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BB341_17235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sclf03400
]
BB341_17235
Enzymes [BR:
sclf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BB341_17235
DNA repair and recombination proteins [BR:
sclf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BB341_17235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANW19839
LinkDB
All DBs
Position
4251286..4254816
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPEEGVAEYPAWETLPHERLSPRSDTVGRRLAVLRRLAHPAADDP
AAGPVSVVVAPIRSVLQPQVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKIADQRSLEVAEHGLWAPPCRELL
LTDEVRRRAAELAEAHPELGELLGKISEGIAVEGMESLAPVLVDEMELLLDVLPTGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLRSIADVRDRARELGMM
WWSVSPFAADEEGGRDTLTLGLNAPESYRGDTARALADTKGWLADGWRTVFVTEAHGPAA
RTVEVLSGEGVPARLDAGTGEIPAAVVQMVCGSIDYGFTAPGLRLAVLTETDLSGQKAAG
KDGQRMPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFSERYGQFPVNVRALSRFQTDTEAKA
TLEGLKDGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESVLEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGA
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEEDIKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLMRLYPRTVIKSATG
QVLVPRPTTGKIGGKPVVGRELLAWTGEFLTTVLGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgatgccgtcgtacgtgatcccgcgctcgcggaggcggtg
gaagccgcccggggcggcacccggacccacgtcgacctggtcggaccgcccgccgcccgc
cccttcgcggtggccgcgctggcccgggaggccggtcgcccggtgctcgccgtgaccgcg
accggccgggaggccgaggatctggcggcggccctgcgctcgctgctgcccgaggagggc
gtggccgagtaccccgcctgggagaccctgccgcacgaacggctctccccccgctccgac
accgtcggccgccgcctggcggtgctgcgccgactggcccaccccgcggcggacgacccg
gcggcgggccccgtctccgttgtcgtcgcgcccatccgttccgtactgcaaccgcaggtc
aaggggttgggcgagctggtgcccgtcgccctgcgcaccgggcagcaggccgatctcgac
gaggtcgtggacgcgctggccgccgccgcgtactcccgggtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggatgtcttcccgcccaccgaggaacacccc
ctgcgggtcgagttctggggcgacgacatcgaggagatccgctacttcaagatcgccgac
cagcgttccctcgaagtcgccgagcatgggctgtgggccccgccctgccgtgagctgctg
ctgacggacgaggtgcgccgccgggccgccgagctggccgaggcccaccccgagctgggc
gaactcctcggcaagatctccgaggggatcgccgtcgagggcatggagtccctggccccc
gtgctcgtcgacgagatggagctgctgctcgacgtgcttcccacgggctcgatggccgtg
gtctgcgacccggagcgggtccgtacccgggccgccgacctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccacggcgggcggcggcgaggccccgatcgatgtgggc
gcggcctccctccggtccatcgccgacgtccgcgaccgcgcccgtgagctgggcatgatg
tggtggtcggtgtccccgttcgccgccgacgaggaaggcggccgggacacgctcaccctc
ggcctgaacgcccccgagtcctaccggggcgacaccgcccgcgcgctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtcttcgtcaccgaggcccacggcccggccgcc
cgcaccgtggaggtgctgagcggcgagggcgtgcccgcccggctggacgccgggaccggc
gagatccccgccgccgtggtccagatggtctgcggctccatcgactacggcttcaccgcc
cccgggctgcggctcgccgtcctcaccgagaccgacctgtccgggcagaaggcggcgggc
aaggacggccagcggatgccgacccggcgccgcaagaccatcgacccgctcaccctggag
accggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcaccgtccagggcgcgacccgcgagtatctggtggtggagtacgccccggccaagcgc
ggccagcccggcgaccggctctacatccccaccgaccagttggagcagatcaccaagtac
gtcggcggcgaggccccgaccctgcaccgcctcggcggcgccgactggaccaagaccaag
gcgcgcgccaagaaggcggtcaaggagatcgccgccgatctgatcaagctctactcggcc
cggatggcggccccgggccacgccttcggcccggacaccccctggcagcgggagctggag
gacgccttcccgtacgcggagacgcccgaccagctctccaccatcgccgaggtcaaggag
gacatggagaagaccgtccccatggaccgtctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtgcgggccgcgttcaaggcggtccaggacggcaagcaggtcgctgtc
ctcgtcccgaccaccctgctggtgcagcagcactacggcaccttctccgagcggtacgga
cagttcccggtgaacgtccgggcgctctcccgcttccagacggacaccgaggcgaaggcg
accctggaggggctgaaggacggcgccgtcgacatcgtcatcggcacccaccgcctcttc
tcctccgagaccaagttcaaggacctcgggctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctcaagaagttgcgcgccaacgtcgacgtgctgacgatg
tccgcgacgccgatcccgcgcacgctggagatggcggtgaccggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcgccacccggtgctcaccttcgtcggcccgtacgag
gagaagcagatcggcgcggccatccggcgcgaactgctccgggagggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgggcggcggcccggctgcgggagatcgtcccc
gaggcgcggatcgcgaccgcccacggccagatgtcggagtcggtcctcgaacaggtcgtc
gtggacttctgggagaagaagttcgacgtcctggtctcgacgacgatcgtggagtccggg
atcgacatctccaacgccaacacgctgatcgtggaacgcggcgacaacttcggcctgtcc
cagctccaccagttgcgcggccgggtgggccggggccgtgagcgcggctacgcctacttc
ctctacccgccggagaagccgctcacggagaccgcgcacgaacggctcgcgacgatcgcc
cagcacaccgagatgggcgcggggatgtatgtcgcgatgaaggacctggagatccggggc
gcgggcaatctgctcggcggggagcagtccgggcatatcgccggggtcggtttcgatctg
tacgtccggatggtcggggaagcggtcgccgactaccgggcctccctcgaaggcggggcc
gaggaggagccgccgctggaggtcaagatcgagcttccggtggacgcccatgtgccgcac
gactacgcgcccggcgagcggctgcggctccaggcgtaccgctcgatcgcctcggccaac
accgaggaggacatcaaggcggtacgggaggagctgaccgaccgttacggcaagctgccg
gagccggtggagaatctgctgctggtggcggggctgcggatgctggcgcgggcctgcggg
gtcggcgagatcgtgctccaggggagcaatatccgcttcgccccggtggagctgcgggag
tcgcaggagctgcggctcatgcggctgtacccccgtacggtgatcaagtccgcgaccggt
caggtgctggtgccccggcccaccacggggaagatcggcggcaagccggtggtgggccgg
gagctgctcgcctggaccggtgagttcctgacgacggtcctggggtcgtga
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