Styela clava (leathery sea squirt): 120327714
Help
Entry
120327714 CDS
T07291
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03020
RNA polymerase
sclv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120327714
09124 Replication and repair
03420 Nucleotide excision repair
120327714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120327714
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120327714
Enzymes [BR:
sclv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120327714
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120327714
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120327714
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
120327714
NCBI-ProteinID:
XP_039249994
LinkDB
All DBs
Position
Unknown
AA seq
2031 aa
AA seq
DB search
MGTLTESTIPLKNVKRVQFGILSPDEIKRMSVTEGGVQYPEASEGGRPKLLGLMDPRQGV
IDRMSRCQTCAGNMTDCPGHFGHIDLSKPVFHVGFLTKTIKVLRCVCFYCSKMLVDKGNP
KIRTILGKSKGQPRKRLLNVYELCKGKNICEGGEEMDETFDVQQREDEEPKKVGHGGCGR
YQPKIKRTGLELVAEWKHVNEDSQEKKIPLTAERVHEIFKRISDEESEIMGMDPRFARPE
WMVITVLPVPPLCVRPSVVMGGGSARSQDDLTHKLADIIKSNQQLKRNEQNGTAAHIIAE
DIKLLQFHVATLFDNELPGVPRALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSART
VITPDPNLKIDTIGVPRSIAANLTYPEIVTPFNIDRMQELVRRGNNQYPGAKYIIRDSGD
RIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVKVLPWSTFRMN
LSVTTPYNADFDGDEMNMHVPQTMETRAEILELAMVPRMIITPQSNRPVMGIVQDTLTAV
RKMTKRDSFIDKPFFMNLLMYLENWDGHMPQPAILKPKPLWTGKQVFSLIVPPGINCVRT
HSTHPDGEDSGPYKHISPGDTKVVVENGTLLSGIICKKSLGTSSGSLCHMVALEHTPDVC
REFYSNIQTVVNYWLMVEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVIEVIEKAHKEDL
QPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVAGSKGSKINISQVI
AVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE
GLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTLRQSNNYMIQLRYGEDGLAGERVEFQN
LATLKPSHKNFEKKFRLDYNNERHLRHCMTEELIRDIQTDVSMQQALDGEFESLRADREV
IRSIFPSGDSKVVLPVNLSRLIWNAQKIFHIDLRQPSSVNPVRVIEGVQDLSKKLIIVSG
EDKLSKEAQHNATLLFNVHLRSTLCTKRVAEEFRLSTEAFEWILGEIETRFQQAQAHPGE
MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPRTPSLTIFLIG
QPTRDAQRCKDVLCRLEHATLRKVTANTAIYYDPDPMNTVIQEDQEFVNVYYEMPDFDVG
RISPWLLRIELDRKRMTDKKLTMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIMNND
ESKMDEDTEEQADKMEDDVFLRYIEANMLTDMTLQGIPQIAKVYMHLPKEESKKRIVITK
EGEFNAVQDWILETDGTALMRVLSERDIDPVRTTSNDICEIFAVLGIEAVRKALEREINH
VISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINRQETGALMRCSFEETVDILMEAAS
SAETDFMSGVSENIMLGQLIPGGTGCFQLLLDAEKCKQAMEIPTNIGGVGGTGMFFGSMA
SPSSMSPSMTPWAGGATPAFAGAFTPGYGSGMTPSAAAFSPAQSDASGFSPGYSPAWSPA
QSPGPASPGSPYIPSPKHSSLSPSYSPVSPAYEPGTPGTPQSPKYSPGYTPTSPTYSPTS
PRYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSP
SSPSYSPSSPSYSPSSPKYSPASPSYSPASPEYSPSSPKYAPSSPSYSPSSPSYSPSSPS
YSPTSPKYSPSSPSYSPSSPSYSPASPEYSPSSPNYSPSSPKSGPASPSYSPSLGYSPSS
PNYSPTSPAYSPSSPGYSPSSPQYTPTSPTYTPGDQESAAASPSYSPSSPSYSPASPAYS
PASPSYTPAYSPSSPQDSYSPTSPGYSPSSPGYTPSTPGGGIYPPQDEDSD
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggggactctgacagaatcaactatacctctgaagaatgtcaaacgtgtccagtttggt
atcctcagtccagatgagattaaacgaatgtctgtgacggaaggtggggtgcaatatcca
gaagcatcggaaggtggtagacccaaattattgggtctaatggaccctcgtcaaggtgtt
attgatcgtatgtcaagatgtcagacttgtgccggaaatatgactgattgcccaggacat
tttggacatattgacctttcaaaaccagtttttcatgttggttttcttacgaagactata
aaagttttacgatgtgtttgcttttattgctccaaaatgctggttgacaaggggaatcca
aaaattcgaacaattcttggaaagtccaaaggtcagccgagaaaacgtttactaaatgtt
tacgagttatgtaagggaaaaaacatttgtgaaggtggagaggaaatggacgaaacattt
gatgttcagcaacgagaggatgaggagcctaagaaggttggacatgggggttgtggtcga
tatcaaccaaaaattaaaaggactggtcttgaattggttgctgagtggaaacatgtgaat
gaagactcacaagagaaaaaaattccactcactgctgagagagttcatgaaatattcaaa
cgaatctcagatgaagaatctgaaataatgggaatggatcctagatttgcgagaccagaa
tggatggtaataactgttctccctgtcccaccactctgtgtcagaccttctgttgtaatg
ggtggtggtagtgccagaagtcaggatgatttgacccacaagcttgctgatattatcaaa
tcaaaccaacaattaaaaagaaatgaacagaatggaaccgcagctcatattattgcagag
gatataaaattattgcaattccatgttgctacgttatttgacaatgaattacctggtgtg
ccgagagcattgcaaaaatcaggaagaccactaaaatcaatcaagcaaagactgaaagca
aaagaaggaagaattcgtggaaatttgatgggaaagcgtgttgatttctccgcaagaaca
gtcatcactcctgatcctaatttgaaaattgatacaattggtgttcctcgttccatagct
gcaaatctcacttatcctgaaattgtcactccatttaacatcgacagaatgcaagagtta
gttagaagaggaaataatcaatatcctggtgcaaaatatatcataagagattcgggagat
cgaattgatcttcgttatcatccaaaaccgtctgacttacatctgcaagttggatacaag
gttgaacgtcacatcaaagacggcgatgttattgtattcaatcgtcagccgacactgcat
aaaatgtctatgatgggacacaaagttaaagttttaccttggtccacattcagaatgaat
ttgtctgtaacgactccatataatgctgattttgatggtgatgagatgaacatgcatgta
ccacaaactatggaaacaagagctgagattttagagttagcaatggtacctcgtatgatc
atcacaccgcaaagcaatcgacctgtcatgggtattgtccaggacacactgaccgctgtc
agaaaaatgaccaaaagagattcattcattgataagccattcttcatgaatttactaatg
tatcttgaaaactgggatgggcacatgccacaacctgccattttgaagccaaaaccactg
tggactggaaaacaagtattttcattgattgttccaccaggcattaactgtgtcagaaca
cacagtactcatcctgatggagaagattctggaccttataaacatatatcacctggtgat
acaaaggttgtagtcgaaaatggtactctcctgagtggtatcatttgcaaaaaatcactt
ggaacatcatctggatcattgtgccacatggtagcgctggaacacactccagatgtttgt
cgtgagttttattcaaacattcaaaccgttgtcaactactggttgatggtcgaaggccac
tcaattggtattggagacactattgctgatgcacaaacctaccaagatattcaaaatcag
attcgtaaagcaaagcaagaggtcatagaggtaattgaaaaagcccacaaagaagatttg
caaccaacacctggtaacacattgagacagacatttgagaaccaagtgaacaggattttg
aacgatgctcgtgacaaaactggttcatctgcccaaaagagtttgtctgaatttaacaat
ttcaaggctatggtggtcgctggatccaaaggatcaaaaattaatatttcccaggtcatt
gctgttgtagggcaacaaaacgttgagggaaaaagaattccgtttggtttcagacacaga
acacttcctcattttataaaggatgattatggtccagaatctagaggatttgttgaaaac
tcatatcttgctggtttgactccaactgaatttttctttcacgctatgggaggtagagaa
ggtcttattgatactgctgtcaaaactgcagaaactggttatattcagcgtcgtttgatc
aaggctatggaatctgtgatggtacgttatgacgggacattgcgacaatcaaacaattac
atgatacaattgagatatggtgaagatggacttgctggagaaagagtcgaatttcaaaat
ctggcaacattgaaaccaagtcacaaaaactttgaaaaaaaattccgtctggattataac
aatgaaagacatttgcgtcactgcatgactgaagaattgattcgtgatatacaaactgat
gtcagtatgcaacaagcacttgatggtgaatttgaatcattgcgagcagatcgtgaagtt
attcgaagtattttcccgagtggtgacagcaaggttgttttgcctgtaaacctcagcaga
ttgatctggaatgcacaaaaaatatttcatattgatctgagacaaccttcatctgtgaat
cctgttcgtgtaattgagggagtccaagacctaagtaaaaaactcatcattgtgagtgga
gaagataaattgagcaaagaagcgcaacataatgcaactcttcttttcaatgtacatttg
agatctactctctgtacaaaacgtgttgctgaggaattcagattatccactgaagcattt
gaatggattctcggtgaaatagaaacacgatttcaacaagctcaggctcatcctggtgaa
atggtgggagctttggctgcacaatcacttggagaacctgccacacagatgacattgaat
acttttcactacgctggtgtatcagcaaagaacgtcactcttggtgtacctcgtttgaag
gaattgatcaacatttcaaaaaagcctagaacaccttctcttactatatttttgattgga
caaccaacccgggatgcccaaagatgcaaggatgtcttatgtagattggagcatgcaaca
ctcaggaaagtgactgcaaatacagcaatttattatgatcctgatccaatgaacactgtt
attcaagaagatcaagaatttgtcaatgtttattatgaaatgcctgattttgatgttggc
cgtatttcaccatggttactccgtattgaattggacaggaaaagaatgactgataaaaag
ttgactatggaacagattgctgaaaaaattagtgctgggttcggcgatgatctcaattgt
attttcaatgatgataatgctgaaaaacttgttctacggatcagaattatgaacaatgat
gagtcaaaaatggacgaggatacagaagaacaagctgataaaatggaagatgatgttttc
ctaagatacattgaagctaatatgttgacggacatgaccttacaaggaattccgcagatt
gctaaagtttatatgcatctgccaaaagaagaaagcaaaaaaagaattgtcataaccaaa
gaaggtgaattcaatgcagtgcaagattggattcttgaaactgatggaactgctttgatg
agagtattatcggaaagagacattgatcctgttcgaacaacttccaacgatatttgtgaa
atatttgcggtgcttggtattgaagctgtacgaaaagccttggagcgtgaaatcaatcat
gtcatatcttttgatggatcatacgtaaactatcgtcacttagctcttctatgtgatgtc
atgacatgcaaaggacacttgatggcaatcacgagacatggaatcaacagacaagaaaca
ggagcactgatgagatgctcgtttgaggaaaccgtggatattcttatggaggctgcttca
tcagctgagactgatttcatgagtggagtttctgaaaatatcatgctgggacaacttata
cctggtggtacaggatgtttccaattattacttgatgcagaaaaatgcaaacaggctatg
gaaatcccaacaaacatcggtggtgttggaggtactggcatgttctttggatcaatggct
tcaccaagttctatgtcaccgagcatgacaccttgggcaggtggtgcaacaccagcgttt
gccggagcatttactcctggctatggttctggaatgacgccaagtgctgctgctttctct
cctgcacaatctgatgcgtctggtttttcacctggatacagtccagcttggagtcctgct
caatcaccaggacctgcaagccctggttctccatatataccatcgccaaagcattcatca
ttgtctccaagttactcaccagtatcacctgcttatgaaccagggacaccaggcacacca
caaagcccgaaatacagtccaggatacacacctacaagtccgacgtattcacctacttca
ccgagatattccccaacaagcccaggatacagcccgacgtcaccttcatattctccgacc
agtccttcttattcacctacatcaccaagctacagtccgacgtcaccttcgtattcacca
acaagtccatcatattcacctacgagtccaagttacagtccgacttcgccatcgtactca
ccaacgagtccatcctattcaccgacgtctccaagctacagtccaacatcacccagctac
tccccaacctctccgagctacagccccacttcaccaagctattctccaacctctccaagc
tacagccccacttcaccaagttattcacccacttcaccatcctattccccaaccagcccc
tcatattctcccacctcacccagttacagcccaacctcaccttcctactcccccacaagt
ccttcatattctccaaccagcccgagctacagtccgaccagcccctcatattctcctacc
agtccttcgtactcacctactagtccgagttattcaccaagctcaccaaagtattcacca
tcgtctccttcatatagtccttcgtctccgagctactcgccatcaagtccaaagtattca
ccagcaagtccatcttacagtccagcatcaccagagtacagcccatcaagtccgaaatac
gctccttcgagtccgagctattcaccatcgtcaccatcttactctccatcatcaccgtct
tacagtcctacatcaccaaaatattccccatcaagcccgagctattctccatcgagtcca
tcatactcgcctgcaagcccggaatactcgccatcatcaccaaactattcaccatcgagt
ccaaaatcaggacctgcaagtccatcgtacagtccatctttgggctactctccaagcagt
cctaactattctccaacaagtcctgcttattcaccttcaagtccgggatattctccatca
agcccacagtatactccaacgagtccgacatacacaccaggggatcaggaatctgctgct
gcatcaccatcttacagtccatctagtccgtcatatagtccagccagccctgcttactcg
ccagcgagtcctagctacacacctgcctattcaccatcaagtccgcaagactcctattct
ccaacaagccctggatatagtccttcttcaccagggtacaccccgagtacaccagggggt
ggcatctacccaccacaagatgaggattctgattga
DBGET
integrated database retrieval system
