Styela clava (leathery sea squirt): 120332285 Help Entry 120332285         CDS       T07291                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism sclv  Styela clava (leathery sea squirt) Pathway sclv03030   DNA replication sclv03410   Base excision repair sclv03420   Nucleotide excision repair sclv03430   Mismatch repair Brite KEGG Orthology (KO) [BR:sclv00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     120332285    03410 Base excision repair     120332285    03420 Nucleotide excision repair     120332285    03430 Mismatch repair     120332285  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:sclv03032]     120332285    03400 DNA repair and recombination proteins [BR:sclv03400]     120332285 Enzymes [BR:sclv01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      120332285     6.5.1.6  DNA ligase (ATP or NAD+)      120332285     6.5.1.7  DNA ligase (ATP, ADP or GTP)      120332285 DNA replication proteins [BR:sclv03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     120332285  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      120332285 DNA repair and recombination proteins [BR:sclv03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      120332285    NER (nucleotide excision repair)     Other NER factors      120332285    MMR (mismatch excision repair)     Other MMR factors      120332285 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  120332285 NCBI-ProteinID:  XP_039255431 LinkDB All DBs Position Unknown AA seq 935 aa AA seqDB search MPQKSIFSFFGGANKKPPVQSSKISSPRKTSPEKSNKHLDNGAEDSPIKIKKRKACTLFE SSDEEDDKIEQSAEKTADLGEKRSNIENVQPKILEPKSPQKDSESESQNPPADVTRTPKG SIKRKTARKSLPDSKKPKMQLTTKTEQTTDKVTSSAADYKTMSPEKAPKSPAKESEVIKA EAAEVSINNKEDDKKSLSPSHDGAMDTTESKDTSFAENQSLKKGQDNSDSTDNDDKSKIQ KDMTKKKKCSSSFNTFFQPKKKENVKEELQSTKVKTKPSNNSASEFDPTVSKYHPVESAC WKHGEKVPYLALARTFAAIEETSGRLKMIEYLSNFYRSVIALTPDDLLPCVYLSLNQLAP AYEGIELGIGDSLLIKAVAETTGRSTEKIKSDQKKLGDLGAVAETSRTTQKMMFAPPPLH VRGVFAKLKQIASISGGSSMGQKVNLVKSLLVACKSSEARYLIRSLSGKLRIGLAEQSVL TALANAATLTPPGKEIFNSGKGMSPEVLKSMLEEKALIVKTTYCELPNYDVIIEKLLKNG IDKLPEHCKITPGIPLKPMLAHPTKGVTEVLSRFDKSAFTCEYKYDGERAQIHVLENGKI EIYSRNQEKNTSKYPDIIARMPQVLKEGIKSCVIDSEAVAWDKVNKQILPFQVLSTRKRK DANLSEITVQVCIYAFDLLYINGQSLVREPLRKRRERLLKSFNQIEGEFVFATSQDSVNT DEIAEFLEESIKGNCEGLMVKTLDDKATYEIAKRSHNWLKLKKDYLEGMGDTLDLVVIGG YHGKGKRTGTYGGFLLACYDNESEEYQTICKIGTGFSDQALSDHTNYFKDHLCDKPKPYY RLNGSEADQWFEPVQVWEVKAADLSISPVYAAGAGIVDPEKGMSLRFPRFIRIRDDKKPE DATTSSQVADMYNQQEQVKNQQQDGGGKKHDTDFY NT seq 2808 nt NT seq  +upstreamnt  +downstreamnt atgcctcaaaaaagtattttctcattttttggtggtgcaaataaaaagcctccagtccag agttcaaaaatatcatctccaaggaaaacttctccagaaaaaagtaataaacatcttgat aacggtgcagaagattcaccaattaaaatcaagaaacggaaagcctgcacactctttgaa tcttcagatgaagaagatgataagattgaacagtctgctgagaaaaccgctgatcttggt gaaaagcgatctaatattgagaatgtccaaccaaagattcttgaacctaaatcaccacaa aaggattcagaatcggaatcgcagaatccaccagctgacgtcactcgaaccccgaaaggg agcattaaaagaaaaacagcaagaaaatcacttccagactctaagaaaccgaaaatgcaa ttgacaacaaaaacagaacagacaacagacaaagttacttcttcagccgctgattacaaa actatgtcaccagaaaaggcgcccaaatcacctgcaaaggaaagtgaagtaataaaagca gaggctgctgaggtttccatcaataataaagaagatgacaaaaaatctttgtccccaagt cacgatggggcaatggatacaaccgagtcgaaagatacttcttttgcagaaaatcagtct ttgaagaaagggcaagataattcagattctacagataatgatgataaatcaaaaattcaa aaggacatgacaaagaaaaagaagtgttcttctagtttcaacaccttttttcaacctaaa aagaaagaaaatgtaaaagaggaacttcaatcaaccaaagtcaagacaaaaccaagtaac aactctgcttcagaattcgatccgactgtttcaaaatatcatcccgttgaaagtgcatgt tggaaacatggtgaaaaggttccatatttagcacttgcaagaacatttgcagctattgag gagacatctggacggttgaaaatgatcgaatatttgtcaaatttttatcgaagtgtaatc gccctaactccggatgatttacttccctgtgtgtatttgagtttgaaccaacttgctcct gcttatgaaggaattgaacttggtattggtgatagtcttttaatcaaagcagtcgcagaa actacaggaagatcaactgaaaaaataaaaagtgatcagaaaaaacttggcgatcttggt gcagttgcagagacgagcaggacaacacagaaaatgatgtttgcccctccgcctcttcat gtccgtggtgtatttgctaaacttaaacagattgcttctatttctggtggttcctccatg ggtcaaaaagtcaacttggtgaagagcttactggttgcatgcaagtctagtgaagctaga tacttgataaggtcattgagtggaaaacttcgaattgggttagctgaacaatcagttctg actgctcttgctaacgctgcaacattaacaccacccggaaaagaaatatttaattctggg aaaggaatgtctcccgaagtactcaagtcaatgttagaagaaaaagctctcatcgtaaag acaacatattgcgaattgccaaattatgatgtcataatagaaaaactactgaagaatgga attgataaattaccagaacattgtaaaataacaccaggaatacccctcaagcctatgctt gctcacccgaccaaaggagtgactgaggtattgagtaggtttgataagagtgcattcact tgcgaatataaatatgatggagaaagagcgcagattcatgttttggaaaatgggaagatt gaaatttacagcagaaatcaagaaaaaaatacatcaaaataccctgatatcattgcaaga atgccacaggttttaaaagaaggcatcaagtcttgcgtaatcgattctgaagccgtcgcc tgggataaagttaacaaacagattcttccgtttcaagttctcagcacaagaaaaagaaaa gatgcaaatttatcagagataactgttcaagtctgtatttatgctttcgatcttctatat attaacggacagtcattagttcgagaaccattgagaaagcgcagagaacgtttgttgaaa agcttcaatcagatagaaggagaatttgtttttgcgacatcacaagattctgtaaataca gatgaaatcgctgaatttttggaagaatcaataaaaggtaattgtgaaggacttatggta aaaacactcgacgataaagctacttatgagatcgcaaaaagatctcataattggctcaaa ttgaaaaaggattatttggaaggaatgggtgatacactagacttggttgtcattggaggt tatcatgggaaaggaaaaagaacaggaacatatggtggatttttattagcttgttatgac aacgaaagtgaagaatatcaaaccatatgcaagattggcaccggatttagtgatcaagct ttgtcagaccatacaaattacttcaaagatcatctgtgtgataaaccaaagccatattat cgtttgaatggttcagaagcagaccaatggtttgaacctgtgcaagtatgggaagtaaag gcagccgatctatccatatcacctgtatatgccgcaggagctggaattgttgatccagag aaaggaatgtcactcagatttccaagattcataaggattcgcgatgataagaaaccagag gatgctacaacgagtagtcaggttgctgacatgtacaaccaacaggagcaagtcaaaaac cagcaacaagatggcggtgggaagaagcatgatacagatttttattaa

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