Styela clava (leathery sea squirt): 120337869
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Entry
120337869 CDS
T07291
Name
(RefSeq) zinc finger SWIM domain-containing protein 8-like isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sclv04121
]
120337869
Ubiquitin system [BR:
sclv04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul2 complex
Target recognizing subunit
120337869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
Motif
Other DBs
NCBI-GeneID:
120337869
NCBI-ProteinID:
XP_039261702
LinkDB
All DBs
Position
Unknown
AA seq
1748 aa
AA seq
DB search
MADVVAEWEAAPEEGMSFDDSDRFEEDSMCSWMSEPESLCKNWRGWQTQLSISGNSGISG
NEKTLSSLRSQCKKGEVQSLIELSAQTVALLLPFEQVEKYPVPIPENLQLRIAFWSFPES
EEDIRLYSCLANGNADEFQKGEHLVRNNCIVDIMQIGFHLSATVQLPQTSINKGWCLVAV
TFDRQRITSCACNCDSNAKWCSHVVALCLARIQQPDTVCLRAPVSESLSRLQRDQLQKFA
QYLISELPQQILPTAQRLLDDLLSSSSTAINEEQGAPDPTAGPSLSDISIWCLDEAALSD
NIKKTLVKFCGPTPIVYSDVNSLYLSSTEPPAASEYSSLLRPLRGREPEGIWNLLSIVRE
MLRRRDCNAILLLDVVTEQCLAFEQVAVWWYNTCTSAAHLHSGGGSHSSHRPANNINSEI
AQHAAATLCDEIVSLWRLVLLNPSLQRSRKEELKVRLRQFHDKTLNIIKRGKYKENHLVL
FPGFKEAIKTCDFDWDGGSCINMCRHIICTCGNSTSPIHSDNELSSGVVMSPKKCFITKT
DQETVMTVYRQELDYLFSRAESLYVHGYTTKACEMAVKLANELLNNPENLVNETAANPTS
NRSWIRACTEYAFKTFDRVVFLCNVLSEHPAHRLLAFQIGLYGLEFERLPASSKAMEVKL
FHKQLQLTNIMKKLPLGPDEISILREKAQCLIAYEENYNGFANRSSVQHVLPLHLTMFVF
DALCQPNRVSSNKDKKFRETNSDSTHETEISKEDQELGFLASVTALGYKLNVSEAEHPLL
CEGTRRQKGELALLLLVSYKNVHSKIKMILDKLLDKTLAPNLQAKSAFTGDSFTSSYYNH
NTSSYLYSRKPKAPVTTTPATPVVPVANSPVNLPKPMTDLISPGPPSKYCTVCQTSVVHR
HNYRVANDSNSSAQADDSSEEDDSRSQPASSKDDTDSTMSSMLHKQLRVDSGNEDIKSSS
CDEEYPTNVCSPQRRDGKQSWRSPTVRPKRRQHCITNVNSSASEEAMLSDTSPRLTRRHA
AHLPLVPSSGSGASTASNKPTTSSSTWMSRYPPSPSSDSSSNHSIKSDDSESNDLSDKPG
PSGQSSIAHVPASSSPQQYQQMVGQHTTTVVGSGGKSRPGNNFRMKNRGRNAVVVPDVPN
QPSEASAHFYFELAKTVLVKAGGNSSTSLFMQPQNSSQGGVNRNLLLAAFEIGLYALGMH
NCVSPNWLSRTYSSHVSWITGQAMEIGSAALQILVDSWEGHLTPTETISLADRASHGRDP
TTVQVAAELALSVLPHAHAVNPNEVQRALLQCREQGTEMLEKANIAVEQAGRGGGVYPEV
LFEVARKWQWLHEKTHNRESRNPSPPQYVVPTSVAGNMQQQPQPYPSIQVPTGGPSMAVP
VTGMVLHPTSVVTFQSDNGVRPHQPVGVTVHSPGIHQPVTLIHQPVTQTPLLHPAAFSPS
AAIVTQSAIPSRSPHPVLDPQYTLPRGNGHHVVPPHILPNGAATMGHQHHTYTPASIHHH
ATGINLVPVQHSNRLHTLQYCAASGAYLAEGPHTHHHHTGHQSLQLATAIAPIPANALPL
HNHPTSYQLQSAFRVSMLALDLLAKRTEDRPNSKYVKNPPYTNNVKWLLKLSIELGMHYV
QQFCLAVVTGISSPFVLQDIAVETAQYLAQNNHQQACSNLRLPFLQPIVQKCLQMYIHFI
HNRLYHLHPADYDDFASLVQNSRTAFCMTPGGLMQFNEVLQSIRRAKSCKKELWQKIVAG
LAMPPSTV
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgttgtagctgaatgggaagctgcccctgaagagggaatgtctttcgatgac
agcgatcgatttgaggaagattcaatgtgttcatggatgagtgagccagaaagtttgtgt
aaaaactggagaggatggcaaactcaactctctataagtgggaactcaggaatttcaggg
aatgagaaaactcttagttctctgagatcacaatgtaaaaaaggtgaagttcagtctttg
atcgagttatctgctcaaacagttgccttgcttcttccttttgaacaagttgagaaatat
cctgtaccaataccagaaaatttacaactaagaattgcattttggagttttccagaaagt
gaagaagacatcagattgtattcctgtttggctaacggaaatgcagacgaatttcagaaa
ggagaacatttggtgcggaataattgtattgttgatattatgcaaattgggtttcatttg
agtgccacggttcaattgccgcagacaagtataaacaagggctggtgtctggtagcagta
acattcgacagacaaagaatcacatcatgcgcttgcaattgcgacagtaatgcaaaatgg
tgttctcatgtagttgctttatgtttggcaagaattcaacagcctgatactgtatgtctt
cgagctcctgtgtccgagtcattatcaagattacaacgagatcagttgcagaagtttgct
cagtatcttatcagtgaattaccccagcaaatcctaccaacagctcagcgattgttagat
gaccttctttcatccagctcaacagctatcaatgaagaacaaggagctcctgatccgact
gctggaccaagtttatctgatatcagtatctggtgtcttgatgaagcagctctcagtgat
aatatcaagaaaacattggttaagttttgtggaccgacacctattgtttacagcgatgtc
aactcgctttatttgtcttcgacggaaccacctgcagcatccgagtactccagtctgctc
aggccacttaggggaagagagccagaaggaatatggaatctacttagtattgttcgagag
atgttgagaagaagagactgcaatgcaatattgctgcttgatgttgttacagagcaatgt
ttagcttttgaacaggttgctgtgtggtggtacaatacttgtacttcagctgcacatttg
catagtggaggtggatctcattcatcacacagacctgctaacaatatcaactctgaaatt
gctcaacatgcggctgcaaccctatgtgacgagattgtttcattgtggagattggttttg
ttgaatccctctcttcaaagaagcagaaaggaagaattgaaagtcagattacgtcaattt
cacgacaaaactctgaacatcattaaaaggggaaaatataaagaaaatcatcttgttttg
tttcctggattcaaggaagcaataaaaacgtgtgattttgattgggatggaggttcatgt
ataaacatgtgcagacatatcatttgtacttgtggaaattctacttctccaatacatagt
gataatgaattgtcatcaggagtggttatgtctccaaagaaatgtttcatcacaaaaaca
gatcaagagactgttatgactgtttacagacaagaacttgattatttgttttcaagggct
gagagtctctacgttcatggatatacaactaaagcatgtgagatggcagtcaaacttgct
aatgaacttttgaataatccagaaaatttagtcaatgaaaccgctgccaatccgactagc
aatagaagttggatcagggcatgcacggaatatgctttcaaaacttttgatagagttgtc
tttctctgcaatgttttatctgaacatccggctcatagattacttgcttttcaaattgga
ctttatggactagaatttgagagattaccagcgagtagtaaagcaatggaagtgaagttg
tttcacaagcaacttcagctcacaaatataatgaagaaacttcctctcggacctgatgaa
atttcgatcttgagagaaaaagcgcaatgcttgatcgcatatgaagaaaattataacgga
tttgcaaatcgatcgagcgtgcaacatgttcttcctcttcatctcacaatgtttgttttt
gatgctctgtgtcagccaaatcgtgtttcatctaacaaagacaaaaaatttcgtgaaaca
aattcagattcaactcatgagactgaaatatcaaaagaagatcaagaattgggatttttg
gcttctgtgactgctttgggatacaagctgaatgtcagcgaggcagagcatccacttttg
tgtgaaggaactcgacgtcaaaagggagagcttgctctgctgttgcttgtatcatataag
aatgtacactccaaaattaaaatgattctcgacaagttgttggataaaacattggctccg
aacttacaagcgaaatctgcttttactggagattcatttacatcaagttattataaccat
aatacctcatcatatttatacagtagaaaaccgaaggctccggtaactacgacaccggcg
acaccagttgtaccagttgcaaattctccggtaaatctaccgaaacctatgactgatttg
atatcacctggtccaccctccaagtattgtacagtctgtcagacctcggttgttcatcgt
cataattacagagtcgcaaatgattcaaattcatcagctcaagcagatgacagtagtgag
gaagatgattccagatcacaacctgctagtagtaaagatgatacggatagtacaatgtca
tccatgctacataaacaattgagagtcgacagcggaaacgaagatatcaaatcgtctagt
tgtgatgaagaatatccaactaatgtttgcagccctcaacgtagagatggtaaacagtcg
tggagatctccaaccgtgagaccaaagagaaggcaacattgcataacgaatgtgaacagc
tcagcttctgaagaagcaatgttgagtgatacgtcacctcgacttacgagaagacatgca
gcacatttacctcttgtcccatcatctggatctggagcatcaacagctagtaataaacca
acaacatcatcatcaacttggatgtccagatatccaccgagtcctagtagtgatagttca
agcaatcattcaataaaaagtgacgattctgaaagtaatgatctatctgataaacctggt
ccaagtggtcagtcatcgatagctcatgtacctgcaagcagcagtccacagcaatatcaa
cagatggttgggcaacataccactacagtggttggatcaggtggaaaatcaaggcccgga
aacaacttcagaatgaagaatcgtggaagaaatgctgttgttgtgcctgacgtaccgaac
caaccatctgaagcatctgctcatttttattttgaactcgctaagactgtcttggtaaaa
gctggtggaaatagcagcacatcattgttcatgcagccacaaaattcatcacaaggagga
gtgaatcgcaacttacttttagctgcatttgaaattggactttatgctcttgggatgcac
aattgtgtttcacctaactggctcagtcgtacatattcatctcatgtgtcatggattaca
ggtcaggccatggaaattggaagtgcagctttacaaattctagtcgattcttgggaagga
catcttaccccaactgaaaccataagtttggctgacagagcatctcacggtagagatcct
actacagttcaagtggctgcagaacttgcactcagtgttctcccacatgcacatgcagtt
aatccaaatgaggtccaacgtgcattgctacaatgtagagagcagggaactgaaatgcta
gagaaggcaaatattgctgtagaacaagctggtagaggtggcggtgtgtatcctgaagtt
ttatttgaagttgctagaaaatggcagtggctccatgaaaagactcacaacagagaatcg
aggaacccgagtccaccacaatatgtggtgccaacgtctgttgctggaaatatgcaacag
caaccacaaccatatccttctatacaagtaccaacaggtggaccgagtatggctgttcca
gttacagggatggtacttcatccaacgagtgtggtcactttccagtctgacaatggggtt
agaccccatcagcctgttggagtcacagttcactcacctggtatccatcaacctgtcacc
ctcatacatcaaccagtgacccagaccccattactgcacccagccgccttttctccgagt
gcagctatcgttacacaatcggcaattccatctcgttctccgcaccctgttctggaccca
caatatactttacccagaggtaatgggcatcatgttgtgccaccccacatcttacccaat
ggggcagctacaatgggtcatcaacaccacacctacacaccggcgtctattcaccatcat
gctactggaattaacttggtaccggtgcaacacagtaatcgtctccacactttgcagtat
tgtgcagccagtggagcttatctagctgaaggtccacatacacatcatcatcacacgggt
catcaatccctacaacttgcgactgctatcgcaccaatcccagcaaatgctctacctcta
cataaccaccccacctcttaccagctccagagtgcattccgagtcagtatgcttgctctt
gatctgcttgcaaagagaactgaagatcgaccaaattcgaaatatgttaaaaatcctccg
tacacaaataatgtcaaatggttattgaagttatccatagaacttggtatgcattatgtt
cagcagttttgtctggcagtcgtcaccggtatttcatctccctttgtcttgcaagatatc
gcagtagaaactgcacaatatctagcacagaataatcatcagcaggcttgctcaaattta
aggctacctttcctgcaacccatcgttcagaaatgcttgcagatgtacatccatttcata
cataatagattatatcatctccatcctgctgattacgatgattttgcatctctagtgcaa
aattcaagaacagctttttgtatgactccaggaggactgatgcagttcaatgaggtactg
caaagcatacgtcgagcgaaatcatgtaaaaaggaactttggcagaagattgttgctggt
ctagctatgcctccatctacagtgtga
DBGET
integrated database retrieval system
