Styela clava (leathery sea squirt): 120340977
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Entry
120340977 CDS
T07291
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120340977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120340977
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120340977
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120340977
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120340977
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_UBZ
PHD_4
Motif
Other DBs
NCBI-GeneID:
120340977
NCBI-ProteinID:
XP_039265316
LinkDB
All DBs
Position
Unknown
AA seq
1992 aa
AA seq
DB search
MARAVIDDYRTSLEDLTFNSKPHINALTMLAEEYLPHADVIVRLIEAKLNKAPSNGKLPL
MYLMDSIVKNVKKNYVPLFAENLVKSFNTTFDTGDEKTKISLYKLRSTWDSYFPLKTLYK
LDVAVNNIDSAWPVKPLPASLQEKPSTSIHVNPKFLKKVDAVPVTSVAVDTPAVHDSVDL
KQDLINKQKQLLDLQQQKLLLELEQTKQQLAMREKRNQLAAKKQPEAVSKDPRLKQAAAS
VAPTGLRVTVVTNGQKPQVRGNTKDPRNQTAAKNTHPPSAETKKQPATLDPRAKNVAIKK
SPANSPAEKPKIVKKSPNDTEKIKKKKVSPQTVKRLAKTSPKNFAKNEVKKTKLFKKKTE
VKTVKNTQSEAVQQSKENIRQKGQLKHIDGEISKKRDRPGRRSPPRNQAPPAKLARRSTS
IERRSPSSPIRRRLEHPKNAPIQRSAAAREVEQIRRDSPMPSDGSISPRFSPEPDESPVK
RNRNWRPPVKRIRHIQSPPESWQREEMPPRPSPPVRRRTSVDPNVRIPQELTLGHQAEIL
KQAEIQLQSGQLTHTQHQELLKQLHQLFELQRLRSLQHVAHHEMPLRTQPPIPLNHHRIH
NEDYIQHDQANFSHDVMQRQDENRPPPFRPPPSPPRMEMEQRDRNDFSRPLHSQRLTPPP
MPPTDPRMNHHPYRPSPQREDQHFVGQDVYIDHIEPPPRPAFLNERHEQMEIDNRRRGPG
PGPIRRRHSGEWERPPQGRSVGGYGEDTGNVFVIESSSQSPVREEPFLPIDAPNNRGRHP
RGFRQSRNLNSQRGKKVHSERVPLRAYAHPETESEPRRPVPLKRKDTRDRPRRSPPRKTQ
DRKLPRHSRKHSPVSERNKRIAKKKDEKKQEKSDGEEDIPRLEEPEDYIIANIPPEAEVY
HKHSMSLKKTRTASDSAQQDLQKQSSSESLSDVKEEITEVVPKSDENAGNNSLMHLSSPD
INKKIDEEVNRSPSLPLKKRKYLISSSSDLKDDAGTTTEPESDTADLQLKDAATVEIEKK
DIQSPKHDGESEDKDEEEKPEVDDDQPSEKPTDNLINKEQELDSKDKESDNLSKESASIE
KEIAAEDKTDLEKIENAAQNDKEDTEKTPEKSPERDIKDNKHEGRLKRIQELAMKDGSKT
PAQKKMMKDRIMEKGRDKSRNKDKGRKREVMDDENLTKSEKERMDVMMAEEEEMLRWEAE
LEKELEREEFARIQEMEAHGRGPMQNRGGGPMRRGWGRDRGGGRGFGRERRDGRRNWGGN
EEFWEEEPPGRIPPLMPMDKDRPPFPDRRRPERMRPHPDRMPPHPRDREWFGPHDRNRRG
PPPPEFDGPWVDDEPRGPPMRGGRFEPRGRFRPGHGPPDDRMLPPHHRDERMEMNDRRGP
PIRDDMPGPHPMHEPRGPPSPPRDEMNQVNVNKLLSDLLNMGIIPGNKPKPVEAEKPSSG
PPSRNASPLPINPTLANIVKPEKPASPDLDASAITSLAKSSVAIEQEATRVPTPVFEDLL
TLDPDANLPEVTFNDVDKLKIRCDDLIKRLYTGIQCSACGMRFTACQTDMYAEHLDWHYR
ANRKDKDGVKETHRTLYPTAGEWIMYEEIVDPSQRAKNQVFDEEMEQGEETEAPAKPQNS
EDLVVPVAQHPEQDKCNVCHEAFKTVYNDEEEEWQYVNCVAVDGKNFHPNCYADHNDQRD
SDPLPTPIRVPLYNPMESSLKGIPGLDTLLTQDESKSEEEADEQKENADQPEEEKVDAES
GLAEKDQQEEFLKTTEHDETMEQPAFAGNDETEQADDVKSEINEENSKRELESETNVDNG
ASNDIVENMTMEPTTTSSDQEPTTEPSSEPTTSMVEDEMPSESSKETQPDETEQPDGTDQ
PFVILNPANDEGIFSQNDENKPPDNIATEETTQVVAPFVVPTDESLVSAVNNESDMDATD
IDLGKQLVEKSEVSDEPDSVQKNENFNSGSDSPIMDNTTQLSSPVRENTGSEESSDHESD
NDSDDGGVTVTI
NT seq
5979 nt
NT seq
+upstream
nt +downstream
nt
atggctagagcagttattgacgactacaggacgtcattggaagatttgaccttcaattcg
aaacctcatatcaacgcgctaactatgttagctgaagaatatcttccccatgcagatgtt
atcgttcgtttgatagaagccaagttaaataaggctccatcgaacggaaaactacctctt
atgtacctgatggattcaattgtcaagaacgtgaagaagaactatgttcctctctttgct
gaaaacctcgtaaaaagcttcaatacaacttttgacacgggtgatgaaaagaccaagata
tctttatacaagcttcgttccacgtgggacagttattttccattgaagactctttacaaa
cttgatgtagctgtgaacaatattgattcggcctggccagttaaacctcttcctgcaagt
cttcaagaaaagccttctacaagcatccatgtaaatcctaagtttctaaaaaaggttgat
gctgttccagtcacaagtgttgcggttgataccccagccgttcatgacagcgtcgacctt
aaacaagatttaataaacaaacaaaaacaattattggatctgcagcaacaaaagttgttg
ttagaacttgaacaaacaaaacaacaacttgcaatgagagagaaaagaaatcaactcgct
gctaagaagcagcctgaagctgtttcaaaagatccaagattgaagcaagctgctgcttcc
gtagctccaacaggactaagggtgactgttgtaacaaatggccagaagcctcaagttcgt
ggtaataccaaagatccaagaaatcaaactgctgctaagaacacgcatccaccatctgct
gagactaaaaaacaacctgctacattggatccgagggcgaagaatgtagccattaagaaa
tctcctgcaaattctcctgcagaaaagccaaaaatagttaaaaagtctccaaatgacacg
gagaaaattaaaaagaaaaaggtatcgccacagactgtaaaaaggttggcaaaaacatca
cctaaaaattttgctaaaaatgaggtaaaaaagacgaaattatttaaaaagaaaactgaa
gtaaaaacagtcaaaaatacacaatcggaagctgttcaacaatcaaaagaaaacattaga
caaaagggacagttgaaacatatagatggagaaatatcaaagaaacgggacagacctggt
cgtcgttcaccacctcgtaatcaagcacctcctgctaagttagccaggagaagcacttct
attgaaaggcgtagtccatcttcccccatcagaagacgcttagaacacccgaaaaatgca
ccaatacaaaggagtgctgctgctagagaggtggaacaaatacgacgagattccccaatg
ccctctgatggatcaatctcacctcgcttttctccagagccagatgaatcacctgttaaa
cgcaatcggaactggagaccacctgtcaaacgaatccgacacatccaatcaccacctgaa
agttggcaaagagaagaaatgccacctcgtccgagtcccccagtaagacgaagaacaagt
gtggatcccaatgttcgaatacctcaggaactaactctcggtcatcaagctgaaattttg
aaacaggctgaaattcaacttcaaagtgggcagttgactcacactcaacatcaggaactc
ctaaaacaacttcaccaactgtttgaattacagcgtcttcgaagtctacaacatgttgct
caccatgaaatgccattacgaacccagccacccataccactgaaccaccataggatacac
aacgaagactatattcaacatgaccaggctaatttttcgcatgatgttatgcaaaggcaa
gatgagaatagaccaccaccattcagacctccgccttcaccacctagaatggaaatggaa
cagagagaccgaaatgatttttcaagaccacttcattcccagcgtcttaccccaccgccg
atgcctcccactgatccaaggatgaatcatcatccatatcgtccttctccacaaagagaa
gaccagcattttgttggacaagatgtttatattgaccatattgaacctccacctaggcca
gcttttcttaatgaacgacatgaacaaatggaaattgataataggcgtcgcggacctggt
cctggacctattcgaaggcgccatagcggagaatgggagagaccaccacaagggcgttct
gttggtgggtatggagaagacactggaaatgtttttgttatagaaagcagttcacaatct
ccagtaagggaagaaccatttctacctatagatgcaccaaataatagaggaaggcatcct
agaggcttcagacaatcaagaaatctgaattcacaaaggggaaagaaagtacactcagaa
cgagtaccactccgagcttatgctcaccctgagactgaatctgagcctcggcgcccagta
cctttaaaaaggaaagatactcgggatagaccgaggcgttccccacctagaaagactcag
gatagaaagctacctcgacactcacgtaaacattctccagtttccgagcgaaataaaaga
attgcaaagaaaaaggatgagaaaaaacaggaaaagagtgatggggaggaagatatccca
agattggaagaaccagaagattatattatcgctaatattcctcctgaagctgaagtttat
cataaacattcaatgtctttgaaaaagacacggacggcatctgattccgcacaacaagac
ttacaaaagcaatcatcgtcagaaagtttatcagatgtaaaagaagaaattacggaagtt
gttccgaaatctgatgaaaatgctggaaataattcactaatgcatttatcttctccggac
atcaataagaaaatagatgaagaagtaaatcgatctccatctttgccgttgaagaaaaga
aaatatttaatttcgtcttctagtgatcttaaagatgatgccggtactacaacagagcca
gaatctgatacagctgatttgcaattgaaagatgctgccactgtggagattgaaaaaaaa
gatattcagtcgccgaaacacgatggtgaaagtgaagacaaagacgaagaagagaagccg
gaagttgacgatgatcaaccatctgagaaacctactgataatcttatcaacaaagagcag
gaattagactctaaagataaggaatctgataatttatcaaaagaatcagcttccattgaa
aaagaaatagcggcggaagataaaactgatttagaaaaaattgaaaatgctgcacaaaat
gacaaggaagatactgaaaagacacctgaaaagtcgcctgaaagggacataaaggataat
aaacatgaagggagattgaaaaggattcaagaacttgccatgaaagatggatcaaaaact
cctgctcaaaaaaaaatgatgaaagaccgaataatggagaaaggccgtgataagtcccgc
aataaagataaaggacgaaaaagggaagtaatggacgacgaaaatttaaccaaatcagaa
aaagagaggatggacgtcatgatggcggaagaagaagaaatgctgagatgggaagcagaa
cttgaaaaagaattggaacgagaggaatttgccagaatacaagaaatggaagctcatggt
agaggtccgatgcaaaacagaggtggtggacctatgagacggggatgggggagagataga
ggtggtggacgaggttttggcagagagagaagagacggtcgaagaaactggggaggtaat
gaagaattctgggaagaagaaccaccgggcagaattcctccactcatgcccatggacaag
gatagacccccattcccagatcggcgacgccctgaaagaatgcgtccccatccagacaga
atgccaccacatcctagggacagagagtggtttggaccacatgacaggaacaggagaggt
cctcctccacccgagttcgatggaccttgggtcgatgatgaacctcgaggtccaccaatg
aggggtggacgatttgaacccagaggtagatttagacctggacatggtcctccagatgac
cgaatgttgccacctcatcatcgggatgaaagaatggaaatgaatgatcgaagaggtcca
ccaatacgcgatgatatgccgggtcctcatcctatgcacgaacctcgaggacctccatct
ccacctcgagatgagatgaatcaggtcaatgtaaacaaactattgagtgacttactcaat
atgggaattatacctggaaataaaccaaaacctgttgaagctgaaaagccatcgagcggt
ccaccaagtcgcaatgcaagtccactgccaatcaatccaactctcgccaatattgtaaag
ccagaaaaaccagcatcccctgatctggacgcttcggctataacaagcttagccaagagt
tctgttgcaatagaacaagaagcaacacgagtgcctacaccagtatttgaagatttgtta
actcttgatccagatgcaaatctacctgaagttacattcaatgacgttgataagttaaaa
ataagatgtgatgatcttattaaaagactttatactggaatccagtgttctgcttgtgga
atgcgatttactgcttgtcaaacagacatgtatgctgaacatcttgactggcattataga
gccaatcgcaaggataaagatggagtaaaggaaacacacagaactctttatcccacagct
ggggaatggataatgtatgaagagattgttgatccctcccaaagagctaagaatcaagta
tttgatgaagaaatggaacaaggagaagagactgaagcaccggcaaaaccacaaaattct
gaagatttagtagtacctgttgcacaacaccccgaacaggataaatgtaatgtctgtcat
gaagcattcaaaacagtatataacgatgaagaagaggaatggcaatatgtaaactgtgtt
gcagtagacggcaaaaatttccatccaaattgctatgcagatcacaatgatcaacgcgac
tctgatccgttacctacgcccatcagagttccgctttataacccgatggaatcaagttta
aagggaatccccggacttgatactttacttactcaggacgaatcaaaatcagaagaagaa
gctgatgaacagaaggaaaatgctgaccaaccagaggaggaaaaagttgatgccgaatct
ggtttggcagagaaagatcaacaggaagaatttttgaaaaccactgaacatgatgaaaca
atggaacaaccagcttttgctggaaatgatgaaacagagcaagcagatgatgtaaaatct
gaaattaatgaagagaattcgaaacgtgaattggaatctgaaactaatgttgataatggg
gcgagtaacgatattgttgaaaacatgacaatggaaccaacgactacctcatctgaccaa
gaacctacaactgaaccatcatcagagcccacgacaagtatggttgaagatgaaatgcct
tcagagagttccaaagaaacacagccagatgaaaccgagcaaccagatgggacggaccaa
ccatttgtcatactgaatcctgctaatgatgaaggaattttttcacaaaatgatgaaaac
aaaccccctgataacattgcaactgaagaaactactcaagttgtggcaccatttgtagtt
ccaactgatgaatctcttgttagtgcagtaaataatgaatctgatatggatgccaccgat
attgatttaggcaaacagttggttgaaaaaagcgaagttagtgatgaacctgattcggtt
caaaaaaatgaaaatttcaattctggttcagatagccctattatggataacacaactcag
ctttcttcccctgttcgagaaaacacaggcagtgaggaatcgtcagatcatgaaagtgat
aatgattcagatgatggtggtgtcactgtaacaatctga
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integrated database retrieval system
