Styela clava (leathery sea squirt): 120342842
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Entry
120342842 CDS
T07291
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03013
Nucleocytoplasmic transport
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120342842
09122 Translation
03013 Nucleocytoplasmic transport
120342842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120342842
03041 Spliceosome [BR:
sclv03041
]
120342842
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120342842
Spliceosome [BR:
sclv03041
]
Complex C
Other components
EJC/TREX
120342842
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120342842
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
120342842
NCBI-ProteinID:
XP_039267760
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MASDFVFQDALSSFKNEIFEDLSSGKIDSIVSITSVFQTISGTEADKRLAADQAFRITVS
NLIQETIKEIHGDKEMANDALKVISLTVVAAKQGMCSASLPFSLLGDLLDCLTLDTCDPV
FCFIEERVATWKSSQFYTAGKNFLLRMCNDLLRRLSQAQNTVFCGRIQLFLARLFPLSEK
SALNLFSQFNSDNVTIYNANAAESILKIKSEESSDEVSDEKPVVVDVKPQKDEIWLDGNL
EGMEVDQPESSVAPSVSDDIKQEQVKHDKGLIVDYELYSSIWSLQDFFRSPTQCYIQDSW
DKFIKNAESVFRVFNSFKLDKHNFTERQMDKAYFAKFLTSEKLTNLQLNDGMFRRQLLCQ
FLILFQYLTGTVKFKSANAVLNEKQNEWIKKTKEKIYSLLEETPPDGKHFASYIKHLLSR
EEFWIQWKNEGCTSFIKNKKETKETEIKQSQSPPAKRRKTGDSNTTQKPKRSTIAEDFIA
GKPLGMGSAELTRLWELCPDNLTACKSEKRSFLPTLEGFFANGIELMDPKNMVEEEYMPY
NDPNFQWRALRLLSQRSPLFFASQPATMQFKVVPQYLKGIMKKLSEEFPQQVPDQPEMIQ
ENGEVDKSLDEEDVDEDQNIQDDDKMQQDKEDELDEDQEEDDDDDEVLEDEEFDNNDDDA
LLDDSQQEDADSEDEGLLEPTAPGDTLSSDQVTTVAQKIGKDWEKLAPYLKLEPKDIAEI
KEDSEDVILQARQTLVTWQDRNRSEARKPALLQALVKANMEHLAKEIS
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgattttgtattccaggatgcattgtcctctttcaagaatgaaattttcgaa
gatttatcaagtggaaagattgattctattgtttcaataacaagtgtttttcaaactatc
tctggcactgaagcagataaacgattggcagcagatcaagcatttcgtattacagtatcc
aatctcattcaggagacaataaaagaaattcatggggataaagaaatggcaaatgatgcg
ttgaaagttatttcactcactgttgttgctgctaaacaaggtatgtgttcggcaagttta
ccattcagccttctaggagatttgttagattgccttactcttgacacatgtgacccagtg
ttttgcttcattgaagagagagtagcaacgtggaaatcttcacagttttatactgcagga
aaaaattttcttctaagaatgtgcaacgatttacttcgcagattatctcaagctcagaac
accgtgttctgtggtagaattcaattgtttcttgctagattatttccactgtcagaaaag
tctgctttaaatttgtttagtcaattcaacagtgacaatgtgacaatatataatgcaaat
gcagccgaatcaattctaaagataaagtcagaggaaagcagtgatgaagtatctgatgaa
aaacctgtcgtggttgatgtgaagccacagaaagatgaaatatggttggatgggaattta
gaaggaatggaagttgatcagccagaatcctctgttgctccgtctgtttctgatgatatc
aagcaagaacaagtcaaacatgataaaggattgattgtggattatgaactatactcaagt
atttggagtttgcaagatttctttcgaagtcctacacaatgctatatacaagattcgtgg
gataaatttataaagaatgcggaatcagtgtttcgtgttttcaacagtttcaagttggat
aagcacaattttacagaacgtcagatggacaaggcatattttgctaaattcctcacttct
gaaaagctcacaaatctccaattaaacgatggaatgtttcgtcgacaactactttgccaa
tttcttattttatttcaatatctaactggaacagtcaagtttaaaagtgctaatgcagta
ttgaatgaaaaacagaatgaatggatcaagaaaacaaaagaaaaaatttattcactattg
gaagaaactccaccagatgggaaacactttgcttcatatataaagcatttactatcaaga
gaagaattttggattcaatggaagaatgaaggttgcacgtcttttatcaaaaataaaaaa
gaaacaaaagaaactgaaatcaaacagtctcaatctcctcctgcgaaaaggaggaagact
ggagattctaatacaacacagaaaccgaagcgaagcacaattgctgaggattttattgct
ggtaaaccacttggaatgggaagtgctgaattaactcgtttgtgggaattatgtcctgac
aatttgactgcttgtaaatcggagaaaagaagttttttgccgacattggaaggtttcttt
gcaaatggtattgaactcatggatcctaaaaacatggtggaagaagaatacatgccttat
aatgatccaaattttcaatggagggcattgagacttctttcacaaagaagtccgttattt
tttgcaagtcaacctgcaacaatgcagtttaaagttgtgcctcaatatttaaaaggaatt
atgaagaaattatctgaagagtttccacaacaagttccagatcaacccgaaatgattcaa
gagaacggtgaggttgataaaagtcttgatgaagaggatgtggatgaagatcaaaacatc
caggatgatgacaagatgcaacaagacaaagaagatgagttagatgaagatcaagaggaa
gatgatgatgacgatgaggttttagaagatgaagaattcgataataatgatgatgatgct
ttgttggatgatagtcaacaagaggatgcagattctgaagatgaagggcttcttgaacct
actgcacctggtgatacattatcaagtgaccaagtcacgactgtggctcaaaaaattgga
aaagattgggaaaaacttgctccttatctcaaattagaaccgaaagatattgctgaaatc
aaagaagattctgaagatgtaattttgcaggcacgccagactcttgtgacatggcaagat
agaaacagatcagaagctagaaaacctgcattattacaagcactagtgaaggcaaatatg
gaacatttagcgaaggagatatcttga
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