Styela clava (leathery sea squirt): 120346524
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Entry
120346524 CDS
T07291
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03013
Nucleocytoplasmic transport
sclv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120346524
03015 mRNA surveillance pathway
120346524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120346524
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120346524
5.6.2.5 RNA 5'-3' helicase
120346524
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120346524
mRNA cycle factors
Common to processing body (P body) and stress granule
120346524
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
120346524
NCBI-ProteinID:
XP_039272225
LinkDB
All DBs
Position
Unknown
AA seq
1129 aa
AA seq
DB search
MSSVDAYGPSSQTLTFLDTEDGDLTVGGDTQASEYEFTDFTIPSQTQTQTQTQQSQASQL
DIAENSQSQVGDVDGVNHNEEVGDGEDIGGLQEHIHVATQGVADLRFEEEDEEDTYYTKD
LPEHACRYCGIHDPNCVVMCNTTKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHRDGQLG
DSVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCANQSSLKDMNWDASQWQPLIQDRC
FLSWLVKIPSDEEQMRARQITAQQINKLEELWKENSDATLEDLEKPGVDEEPQAVLLRYE
DAYQYQNIFGPLVKLEADYDRRLKESQTQGNITVRWDVGLNKKRLAYFQLPKTDSDMKLM
QGDEISLRHMGSNWEGKGHVVKVPDNFGDEIGMELRSAASAPLENTRGFQVDFVWKSTSF
DRMQSSMKTFAVDEASVSAYIYHRLLGHEVDEQTLKINLPKRFSAPGLPELNHSQVYACQ
NLFWHVRCCLIPRSHAGTGENQQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKVVKLFD
SNVSFLSLHNQVRSMDSLPELQKLQQLKDETGELSSNDEKRYRALKRNAERELLQNADVI
CCTCVGAGDPRLVKFRFRSILIDESTQATEPECMVPVVLGAKQLILVGDHXSVGTCVMCK
KAANAGXAQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGERMRT
GLTFSWPSPDKPMFFYKTSGQEEIASSGTSYLNRTEAVVVERITTKFLKSGIKPEQIGII
TPYEGQRSYLVQYMQYSGSLHSKLYMEVEVASVDAFQGREKDFIILSCVRANEHQGIGFL
NDPRRLNVALTRARFGVIIVGSPKALSKQPLWNHLLTYFKEQRALVEGPLGNLKESLMQF
SKPRKLTNTLNPGGRYMSNAMWDAREALIPGGAYDRSSQFNGNIPPRHQYFRTHDQMGMI
NPAQAQAMSVSLPVPVNMYMQPSVPPNYYQNGHMQGRPPPKGRAPRLSRGAHHNGMAQQG
RDGSRGYAGQQAATQSQDMTQGFSQASTELHSSVTPQPWSMTQGYGTGLSMSQPISQGMS
QLGLSQAELSQDSYLGEEFRSQVDAALSQDSTYQGERAYATQGLNFSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgttgatgcatatgggccaagttcccaaactctgacatttttggacacagaa
gatggcgatttgactgttggaggagatacccaggcaagtgaatatgagttcacagacttc
acaattccatcccaaacccagacgcaaactcagacacagcaaagtcaagcaagccaactt
gatattgcggagaacagtcagagtcaggttggtgatgtagatggagtcaatcacaatgaa
gaagtgggggatggtgaagatattggtggattacaagaacatattcatgttgccacccag
ggggttgctgatctgagatttgaggaagaagatgaagaagatacttattatactaaggat
cttcccgaacatgcttgcaggtattgtggaattcatgatcctaactgtgttgtgatgtgt
aatacaacaaagaaatggttttgcaatggccgtggaaatacttcaggaagtcatattgtg
aatcatctggtgagagccaaatgcaaggaggtcactcttcatcgtgatggtcagctcggt
gattctgtgttggaatgttataattgtggatgccgcaatgtgtttcttcttggattcata
cctgccaaagcagattctgttgttgttcttttgtgcaggcaaccatgtgcgaatcagagt
agcctgaaagatatgaattgggatgcatctcagtggcaacctttgattcaagatcgttgt
tttttgtcttggctggtcaaaattccttctgatgaggaacagatgagagcaagacaaatc
actgctcagcagatcaataaattggaagaattatggaaggaaaattctgatgcaacactc
gaagatttagaaaaaccaggagtggatgaggagccacaagctgttttattgagatatgaa
gatgcctaccagtatcaaaatatctttggtcctctcgtcaagttagaagctgattacgat
cgcagactgaaagaatctcaaacgcaaggaaacatcaccgttagatgggatgttggccta
aacaagaaacgtcttgcttattttcagttgccaaagactgacagtgacatgaagctgatg
caaggagatgaaataagcttgagacatatgggttcgaactgggaaggcaaaggacatgtt
gtaaaagtaccagataattttggtgatgagattggaatggaattgagatctgctgcgagt
gcaccactagagaataccagaggatttcaagttgattttgtttggaaatctacttctttt
gataggatgcagagttccatgaaaaccttcgctgtggatgaagcatctgtttcagcttac
atttatcatcgattgctaggacatgaagtagatgaacaaacattgaaaattaatcttccc
aaacgtttctctgcacctggtctacctgagctgaatcattctcaggtgtatgcctgtcaa
aacctgttctggcacgtccgctgctgtttgattccaaggagccacgctggtactggagaa
aatcagcaagttcttgtttgcgctccgagcaacattgctgttgaccaactgactgagaag
attcacagaactggattgaaggttgtgcgtctttgtgcaaaagtcgtgaagctatttgat
tctaacgtttcattcttgtctctgcataatcaagtcagaagcatggatagcttgcctgaa
ctgcaaaagcttcaacagctgaaagacgaaactggtgaattgtcttctaatgatgagaaa
agatatcgggcattgaaacgcaatgcagaacgtgaattactccagaatgcggatgttata
tgttgtacttgtgttggagctggtgatcctcgtcttgtgaagtttcgtttcagatctata
ttgattgatgaaagcactcaagcaactgaacctgagtgtatggtacctgttgtccttggg
gctaagcagctcatcttagttggtgatcatnnttcagttgggacctgtgtcatgtgtaag
aaagcagcaaatgcagganttgctcaatctcttttcgagagattggttgtacttggcatt
agacctataagattgcaggtacaatacagaatgcatccagctctctctgctttcccatcc
aacatcttctatgaaggttctctacagaatggtgtcactgctggtgaaagaatgagaact
ggactgactttttcttggccttctcctgacaaaccaatgttcttctataagacttcagga
caagaagaaattgcaagctctggaacatcctacttgaacagaaccgaagctgtcgttgta
gaacggatcacaaccaagttcttaaaatctggaatcaagcctgaacagattggtataatt
actccatatgaagggcaacgttcatatttggttcaatacatgcagtattctggatctcta
cattccaagttgtacatggaagttgaagtggcaagtgtggatgcttttcaaggtcgtgag
aaagatttcatcattctttcctgtgtgagagccaatgaacatcaaggaattggattttta
aacgatccccgtcgtctaaatgtagctttgacaagagccagattcggtgtgattattgtt
ggaagtcccaaagctctctcgaagcaacctttatggaatcaccttctcacttatttcaaa
gaacagcgggcattggtggaaggtccactcggaaatttgaaagaaagtctcatgcaattc
tcgaagccaagaaaactgactaatactcttaaccctggtggtcgttatatgagcaatgca
atgtgggatgcaagagaggcattgatacctggtggagcctatgacagatcttctcaattt
aatggcaacattcctcctcgtcaccagtatttccgaactcatgatcaaatgggaatgatt
aatcctgctcaagctcaagcaatgagtgtttctctacctgttccagtcaacatgtacatg
caaccctctgtgccacctaactattaccagaatggacacatgcaaggtcgtcctccacca
aagggtcgtgcaccacgtttgagtagaggtgcccatcacaatggtatggcacaacaaggt
agagatgggtcacgtggttatgcgggtcagcaggccgccacccagtctcaagatatgacg
caaggattctcacaagcatcaacagaacttcacagctctgtgactccccagccttggagt
atgacgcaaggttatggcactggcttgtcgatgagtcaaccaatcagtcaaggaatgagc
caactaggcctttctcaggctgaattatcacaggatagttatcttggtgaagaatttcgt
tcacaagttgatgcagcattgtcccaggattcaacttaccagggtgaacgtgcttatgcg
acacagggattgaatttctcccagtattag
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integrated database retrieval system
