Schizophyllum commune: SCHCO_01282735
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Entry
SCHCO_01282735 CDS
T01331
Symbol
SCHCODRAFT_01282735
Name
(RefSeq) DEAD-domain-containing protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
scm
Schizophyllum commune
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_01282735 (SCHCODRAFT_01282735)
03041 Spliceosome [BR:
scm03041
]
SCHCO_01282735 (SCHCODRAFT_01282735)
03036 Chromosome and associated proteins [BR:
scm03036
]
SCHCO_01282735 (SCHCODRAFT_01282735)
Enzymes [BR:
scm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCHCO_01282735 (SCHCODRAFT_01282735)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SCHCO_01282735 (SCHCODRAFT_01282735)
mRNA cycle factors
Common to processing body (P body) and stress granule
SCHCO_01282735 (SCHCODRAFT_01282735)
Spliceosome [BR:
scm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
SCHCO_01282735 (SCHCODRAFT_01282735)
Chromosome and associated proteins [BR:
scm03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
SCHCO_01282735 (SCHCODRAFT_01282735)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
9595592
NCBI-ProteinID:
XP_003032720
UniProt:
D8Q0T9
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MSNGIVNNSTGLEGSFASLGLSKTAYVPPHMRNSQRAASTNEDVRFRSDAPPRTSTPGSG
RGGFTPGGDRPASFNNNRSFSGPGRPPSQNWSSGGGGGERGGAIGFGAWRDGKHVPGGRN
ARLEKELFGDVGDVTKQQTGINFEKYDDIPVEATGAGVPEPVLEFTNPPLDPVLLENIAM
AHYTTPTPVQKYSIPIVANNRDLMACAQTGSGKTGGFLFPILSASFAAGPAPTPDQGASY
GRQRKAYPTALVLAPTRELVSQIHEEARKFAYRSWVRPCVVYGGADIGQQLRTLERGCDL
LSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPGVHERQTL
MFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQKIEFVEDPDKRSVLLDILSANQ
APAANGGNGMGLTLVFVETKRMADGLCDFLLSHRMPATSIHGDRTQREREMALNTFRSGR
TPILVATAVAARGLDIPNVTHVVNYDLPGDIDDYVHRIGRTGRAGNTGVSTAFFNRSNRN
IVRELVELLREANQEVPQWLESVAHEVAFGSGGGGYRGGRGRGRGGGRGSSTGGRDYRFS
SGGGGGGGFSGGYSGGGGYSGGGGYGGGAPRYGGGGGGGGYSGGGGAAGGWW
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatggaatcgtgaacaactcgactggtctcgagggcagcttcgcttctctcggt
ctcagcaaaacggcctatgttcctccccacatgaggaattcgcagcgggctgcatctacg
aacgaggatgttcgtttcaggtccgacgctccccctcgcaccagcacccccggctcaggc
cgtggtggtttcactcccggtggagacaggccggcgtcctttaacaacaatcgttccttc
tccgggcctggtcgccccccttcccaaaactggtccagtggcggcggcggcggtgagcgc
ggcggcgccatcggcttcggcgcgtggcgcgacggcaagcacgttcccggcggtcgtaac
gcccgcctcgagaaggagctcttcggtgacgtcggcgatgttaccaagcagcagaccggt
atcaacttcgagaagtacgacgacatccccgttgaggccacgggcgctggcgtccccgag
cccgtactcgagttcaccaaccctcccttggaccccgttcttttggagaatatcgctatg
gcgcactacacgacgcctacccctgtccagaagtattcgatccccatcgtagctaacaac
cgtgacttgatggcctgcgcgcagacgggttccggtaagaccggtggtttcctgttcccc
atcctgtcggcgtccttcgccgctggacccgcgcccacccccgatcagggtgcgagctac
ggccgccagcgcaaggcctaccctacggctcttgtcctcgcgccgactcgtgagctcgtc
tcgcagatccacgaggaggcccgcaaatttgcctatcgttcctgggtgcgcccttgcgtc
gtgtacggtggtgccgacatcggtcagcagctccgcaccctcgagcgtggctgtgacctg
ctttctgccactcctggtcgtctcgtcgatcttatcgagcgtggccgtatcagccttgcc
aacatcaagtacctcgtgctcgatgaggccgatcgcatgcttgacatgggtttcgagccg
cagattcgccgtatcgtccagggcgaggacatgcccggtgttcatgagcgtcagaccctt
atgttcagcgccaccttcccccgcgacatccagctgctcgccaaggacttcctgaaggac
tacatcttcctgtccgtcggccgtgtcggttcgacctccgagaacatcacgcagaagatc
gagttcgttgaggaccctgacaagcgctccgtcctgctcgacatcctcagcgcgaaccag
gcgccggctgccaacggcggcaacggcatgggtctgacgctcgtcttcgtcgagaccaag
cgcatggccgatggcctgtgcgacttccttctgtcgcaccgcatgcccgccacgtccatc
cacggtgaccgcacccagcgcgagcgtgagatggcgctcaacaccttccgctccggccgc
acgcccatcctcgtcgcgaccgccgtcgccgcccgtggtctcgatatccccaacgtcacc
cacgtcgtcaactacgatctgcctggcgacatcgacgactacgtccatcgcatcggtcgt
acgggtcgtgccggtaacacgggtgtctccaccgcgttcttcaaccgctcgaaccgcaac
atcgtccgcgagctcgtcgagctcctccgcgaggccaaccaggaggtcccgcagtggctc
gagagtgtcgcgcacgaggtcgcgttcggctctggcggcggaggctaccgcggcggtcgt
ggtcgcggtcgcggtggcggccgtggcagcagcactggtggtcgcgactaccgcttctcc
agcggtggtggcggcggcggtggcttcagcggcggctacagcggtggtggaggctactct
ggcggaggtggctacggtggaggtgctccgcgctacggcggcggtggaggcggtggaggc
tacagcggtggtggtggtgctgccggtggctggtggtaa
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