Schizophyllum commune: SCHCO_02535529
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Entry
SCHCO_02535529 CDS
T01331
Symbol
SCHCODRAFT_02535529
Name
(RefSeq) DNA ligase IV-like protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
scm
Schizophyllum commune
Pathway
scm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCHCO_02535529 (SCHCODRAFT_02535529)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scm03400
]
SCHCO_02535529 (SCHCODRAFT_02535529)
Enzymes [BR:
scm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCHCO_02535529 (SCHCODRAFT_02535529)
DNA repair and recombination proteins [BR:
scm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SCHCO_02535529 (SCHCODRAFT_02535529)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
DNA_ligase_A_C
BRCT_3
Motif
Other DBs
NCBI-GeneID:
9590663
NCBI-ProteinID:
XP_050201055
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MQATPAPTEAPGSPQPSQTTASQQPFPEQPYNTDTLPFHILTAFFEKLQGERKQEKRRKL
LNHWFNKWREDNGPDLYPVLRLILPHRDRERNVYGLKEKALAKLYIKVIPLNKNDPDAMR
LLYWKKPTEKHASTCASSAASGDFPTVLYEVVSKRSSVTQSTLTIDDINDMLDQLADMSN
KSEKQSKIIQRLYNEATPEQQLWFARIILKDMNISVKETTVFAVFHPDAQALYNTCSDLK
KVAWQLADPSIRLHEDEKQVKLGQPFMPMLCKRPMKRIEDTAQEMDGSEFIIEEKLDGER
MQLHKMGNQYYYSSRKGKDYTYLYGSHVGAGSLTPYIAHRFHKQADSAILDGEMLVWDPI
SGRNLPFGTLKTAALDQSKKQAAPRPCLKVFDLLYLNGKSLIDKSTAFRKKNMRLVIEAL
PGRIEFVDEFKGRTAQDIREKMDEVMANRGEGLVIKHPKSQYVLNGRNNDWIKVKPEYMD
NMGETVDVLVVAGNYGSGRRSGGVSTLICAVFDDRNTGSFNENESKFSTFVRVGSGLTYA
DYMWLRAKNWKTWDAKNSPTYLQTAKRSHEDKGDVYLEYEDTFILKVKAAEITPSDQYHV
RYTMRFPRALSIREEMAPGDCMTASAVVEQLKTAKKRKMETNKVSSTKKRKVVKKKVEML
PRFDGPDMKDVKEESDLFKGMKFVVISDPKARTGEEDRKKLMKLIRSHGGQCPQFAKDPA
AIVVYNGTSTPYDLQLIIRKDTNDVVRPQWVMDCIAKGELVPMEKKYFFFATTARKETAE
YGEDGGAESSGSVTQESSDDEAAAETSQSSKKRKRAGKSAEPETQDKTADEEKATPAPSK
PKVDLDPGLAAWLGYDEDDAAGVEDDAGEKDERGGRDDVESDNDSDNQDVKDEEEEDDMA
FWFNEDDGDDSATATLPTQKTTQSTADTQKGDDAPTTQPEVKMGDDNAMHYDEELIFKYL
CFYLDSPSNARASGMSVKSTAHEDEINESFEELRSKIESNGGRVVDLSEPKLTHVVLDKR
DLSRRIDLMRRTSKPKRRHLVLTAYIDACLEENTLLDEDDFAP
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgacccctgcacccacagaagcccctggctctccgcagccttcgcaaacaaca
gcttcgcaacaaccatttcctgagcagccctataacaccgacaccctccccttccatatc
ctcaccgcattctttgagaagctacaaggagagcgtaagcaggagaagcgcaggaagcta
ctcaaccactggttcaacaaatggagagaagacaatggaccagacctgtatcctgtactg
agactgattcttccgcatcgcgaccgagaacgcaatgtgtatggcctgaaagagaaggca
ctcgccaagttatacatcaaggtgatacccttgaataagaacgacccagatgctatgcgg
ctgctgtactggaagaaaccgacagagaagcatgcaagtacttgcgcaagctctgctgca
tctggagactttccgaccgtgctttacgaggtcgtcagcaagcgttcctcggtcactcag
agcaccttgaccatcgacgacataaacgacatgctcgaccagcttgccgacatgtcgaac
aagtcagagaagcagtcgaagatcatccaaagactttacaatgaggcgacacccgagcag
cagctttggtttgcgcgcatcattctcaaggacatgaacatctccgtcaaggagaccacc
gtcttcgccgtcttccaccccgacgcgcaggcgctctacaacacttgctccgacctcaag
aaggtggcatggcagctcgcagatccgagcatccgactccatgaagatgagaagcaagta
aagctcggccagcctttcatgcccatgctctgcaagcggcccatgaagcggattgaggat
acggcgcaggagatggacggctctgagttcatcattgaggagaagctggacggcgagcga
atgcagttgcacaagatggggaaccagtactactactcttcgaggaaaggcaaggactac
acctacctctacggctcgcacgttggcgccggaagtctgaccccttacatcgcgcaccgc
ttccacaagcaggccgactccgccatcctcgacggcgaaatgctcgtctgggaccccatc
tccgggcgcaacctccccttcggcaccctcaaaaccgccgccctcgaccagtccaaaaag
caagccgcgccccgcccctgcctcaaagtcttcgacctcctgtacctcaacggaaagtcc
ctcatcgacaagtccaccgccttccgcaagaagaacatgcgcctggtcatcgaggcgctg
cccgggcggatcgagttcgtcgacgagttcaaggggcggacggcgcaggacatacgggag
aagatggacgaggtgatggcgaatcggggggaggggctggtgattaagcacccgaagtcg
cagtatgtgctgaatgggaggaataatgattggattaaggtgaagccggagtatatggac
aacatgggcgagaccgtggacgtgctcgtcgtcgccggcaactacgggtctggcagacgg
tccggcggcgtctcgaccctcatctgcgccgtcttcgacgaccggaatacaggcagcttc
aacgagaatgaatccaaattcagcacctttgtccgcgtcgggtctggcctaacgtacgcc
gactacatgtggctgcgcgcgaaaaactggaagacgtgggacgccaagaactcgccgacg
tacttgcagacagcgaagcggtcgcatgaagacaagggggatgtgtatttggagtacgag
gacacgttcatcctgaaggtcaaggcagcggaaatcacgccgtctgaccagtaccatgtc
cgctacacgatgcgctttcctcgcgcgctgtccatccgggaggagatggctccgggggac
tgcatgacggcgagtgccgtcgtcgagcagctgaagaccgcgaaaaagcgcaagatggag
acgaataaggtctcgtccacgaagaaacgcaaggtcgtgaagaagaaggtggagatgctc
ccgcgcttcgacggaccggatatgaaggacgtgaaggaggagagcgatttgttcaaggga
atgaagtttgtcgtcatctccgacccgaaggcaaggacgggcgaggaggacaggaagaag
ttgatgaagctcatccgctcgcatgggggacagtgcccgcagttcgcgaaggacccggct
gcaattgtggtgtacaatgggacgtcgacgccctacgacctccaactcatcatccggaag
gacacgaatgacgtggtgcgccctcagtgggtgatggactgtatcgcaaagggcgagttg
gtgccgatggagaagaaatatttcttcttcgccaccacagcgcgcaaagagaccgccgag
tacggcgaggatggcggtgctgaatcgagcggcagcgtgacgcaggagtcgtcggatgat
gaggccgccgcggagacgtcgcagagcagcaagaagcgcaagcgagctggcaagtcggcg
gaaccggaaacgcaggacaagaccgccgacgaggagaaggccacacctgcaccctcgaag
cccaaggtcgacctggacccggggcttgcggcgtggctgggctatgacgaggacgacgcg
gcgggagtggaggacgatgcaggggagaaagacgagcgcggtggccgagacgacgtcgag
tccgacaacgactcggacaatcaagatgtcaaggacgaagaggaagaggatgacatggcc
ttctggttcaacgaggacgacggagatgactctgccacggccacgcttcccacgcaaaag
accacacaatcgaccgccgacacgcagaagggggatgacgcccccacgacgcaaccggaa
gtgaagatgggcgacgacaacgcgatgcattacgacgaggagctcatattcaagtaccta
tgcttctacctcgactcgccctccaacgcacgcgcatccggcatgtccgttaaatcgacc
gcacatgaggatgagatcaacgagagctttgaagagctgagatcgaagatcgagagcaac
ggaggccgagtggtcgacctgagcgagccgaagttgacgcatgtcgtgctggataagcgg
gatttgagcaggaggatagatctcatgaggcgcacgtcgaagccgaaacgccggcatctc
gtgttaaccgcgtatatcgacgcgtgtctggaggagaacacgctactggacgaagatgac
ttcgcgccgtag
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