Schizophyllum commune: SCHCO_02626638
Help
Entry
SCHCO_02626638 CDS
T01331
Symbol
SCHCODRAFT_02626638
Name
(RefSeq) transcription factor Tfb2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
scm
Schizophyllum commune
Pathway
scm03022
Basal transcription factors
scm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SCHCO_02626638 (SCHCODRAFT_02626638)
09124 Replication and repair
03420 Nucleotide excision repair
SCHCO_02626638 (SCHCODRAFT_02626638)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scm03021
]
SCHCO_02626638 (SCHCODRAFT_02626638)
03400 DNA repair and recombination proteins [BR:
scm03400
]
SCHCO_02626638 (SCHCODRAFT_02626638)
Transcription machinery [BR:
scm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SCHCO_02626638 (SCHCODRAFT_02626638)
DNA repair and recombination proteins [BR:
scm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SCHCO_02626638 (SCHCODRAFT_02626638)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
RPN6_C_helix
Motif
Other DBs
NCBI-GeneID:
9596223
NCBI-ProteinID:
XP_050200134
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MPSIIQEASSQPELASSVPHSLLPFLQSQPQNTLARLYQRPSSCLSIFRLLGPLERQIVM
NLLWLESAVPVSTMGAWVVREHQKIYEAALETLGKLHIVPTSPVKLAVHPTFKSSLRQAL
TGGGTQGSFGIPAEPDGKQQAPDVGKLDGYALERWETILHFMVSSGTGQESAQPAAGVTY
LLKESGLMESRGGTLRITSAGFQFLLLTPHAQLWELLIHYLRLQEANNIDLVEVLSFLFM
VSTTELGKEYSTENLSTSQLVVMDDLRHYGLLWQRKKNYPRFSPTRLATTLTSSAPPLPT
SSGPTSGPKEGFIVLETNYRVYAYTDNALQTAVLNLFITPKYRFPNLVVGSITRESVKRA
MSNGITADQIISYLITHAHPQMHKNNPLLPVTVQDQIRLWELERNRTKSQEGFLYTEFAS
QADYEYVLNYAKQLGVVLWENHAKRCFFAAQEGHANIKSFIERKRAGM
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgccatccatcatacaggaggcttccagtcaaccagaactcgcgtctagcgtcccgcat
tctctgctgccttttcttcagtctcaaccacaaaataccctcgcacgactataccaacga
ccttcgtcatgtctttctatcttccgattgcttgggcccctcgagcgtcagattgttatg
aatcttttgtggcttgagtccgctgttccagtgtcgactatgggcgcttgggtcgtccgt
gaacaccagaagatctacgaggccgcattagaaacgctgggaaaattgcatatcgtccct
acgtccccggtaaaattggctgtacatccgacattcaagtcaagcttacgacaggcccta
accggagggggcacgcaagggagttttgggataccagccgaaccagatggcaagcagcag
gcgcctgatgtaggaaaactcgacggatacgcgctcgagcggtgggagacgattctccac
ttcatggtgtcctccggcacagggcaggagtccgcacaaccagctgccggcgtcacgtac
ttgttgaaggagagcggcctgatggagagccgagggggaacgctgcgcattacttcggct
gggttccagtttcttcttttgacgcctcacgcccagctttgggagctcttgatacactat
ctgcgtttgcaagaggccaataatatcgatctcgtcgaggtcctcagcttcctcttcatg
gtctcgacaacggaattgggcaaggagtactcgacggagaacctgagcaccagtcagcta
gtcgtgatggacgacctgcgtcactacggtctgttgtggcagcggaagaagaattatcct
cggttcagccccacgagactagcgaccaccctcacctcctccgcgcccccgttacccaca
tcctccggcccaacgtcaggccccaaagagggcttcatcgtccttgaaacgaattacagg
gtgtatgcatacacagacaacgcgctccagacggccgtcctgaatttgttcatcacgcca
aagtataggtttcccaacctcgtcgtcggatcgatcacgcgcgagagcgtcaagcgggcg
atgtccaatggcattacagccgaccagattatcagctacctgattactcacgcgcacccc
caaatgcacaaaaataaccctctgctacctgtcaccgtccaggaccaaatccgactctgg
gagctcgagcgcaaccgcacgaaatcacaggaggggttcttgtacacggagttcgcgtcg
caggcggactacgagtacgtcctcaattatgcgaagcagctgggggtcgtgctgtgggag
aaccacgcgaagcgctgcttcttcgccgcgcaggaaggtcacgcgaacatcaagtcgttc
attgaacgcaagcgggctggcatgtag
DBGET
integrated database retrieval system