Solitalea canadensis: Solca_1673
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Entry
Solca_1673 CDS
T02084
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scn
Solitalea canadensis
Pathway
scn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Solca_1673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scn03400
]
Solca_1673
Enzymes [BR:
scn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Solca_1673
DNA repair and recombination proteins [BR:
scn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Solca_1673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AFD06739
UniProt:
H8KQK1
LinkDB
All DBs
Position
complement(2018048..2020480)
Genome browser
AA seq
810 aa
AA seq
DB search
MPKLKEYIDKRNFSQTKEPVGGDVTGKKLAFVVQRHHASRLHYDFRLQMKGVLKSWAVPK
GPSLNPQDKRLAMMVEDHPLDYKDFEGEIPKGNYGAGNVHIWDEGYYIPIADYKDPEKGL
LAELKSGNLKIILMGKRLKGEFAIVKIKSDEENAWLLIKHKDKYAVNKDYDSEDFVAAKI
KNKKNITSEQTATKKKSVRTHTTIKPITPMMATLGSDMVKGDDWIFEPKLDGYRIVAITD
GYHNSKLFTRNQLDYTSKYENVAEILKKLDRACVLDGEVVKLNDDGKPSFNALQLFGKNP
VGKVHYYVFDLLQLDEHSLLEMPLTDRKKILEALVKSIDSPYIIFTPYESGNGNKLLEEA
RKNNSEGIMAKKADSIYHPGYRTKEWIKLKVNQEDEFIIGGYTEPRGKKGLIGAFLLGEN
KNGNLTFSGKCGTGLDELRDQEIYATLKDYEITKSPFTTKITNDTKIHWLKPELVCTVKY
SERTEDGKLRHPVFKALREDKTVTDMKPAEDNYEIKANGNKVTITNRNKVYFPDNGITKG
DVVDYYDTIADYILPYLKDRPLSLHRHPNGINAPSFFQKDIETKSYNWLKTVSIHSESND
KDIDYLVCNDKKTLLYMANLGCIEINPWLSRYPGIEKPDFLVLDLDPEQIGFESVIEVAL
TIKELLDSLSIPSYPKTSGSTGIHIYIYTGAKYHYDSVKLFAEWLAGKAHELIPSISSIE
RSPQKRQKKVYIDFLQNRKGQTIAAAYSLRPKPGATVSWPLSWDEVTKELKMEDYTIKNV
PSLLTKRKNPWADIYSSTVNIAAIMKKLQV
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacttaaggagtatattgataagcgcaacttctcacaaaccaaagaaccagtg
ggtggagatgttacgggcaaaaaattagcttttgttgtacagcgtcaccatgcttcccgg
ttgcattatgattttcgcttgcaaatgaagggtgtgctaaaaagttgggctgttcctaaa
ggcccttccttaaatccacaggataagcgattggccatgatggtagaagatcatcccttg
gattataaagactttgagggagaaatccctaaagggaattatggagccggaaatgtacac
atctgggatgaagggtattatattccaattgcagactataaagatcccgaaaaggggtta
ctcgcagaacttaaaagtggcaatctgaagattatcctgatggggaaacgactcaaagga
gaatttgccatcgtaaagattaagtcggatgaggaaaatgcgtggttgttaataaagcat
aaagataaatatgctgtaaataaggattacgacagcgaagactttgtagctgcaaaaatt
aaaaataaaaagaacatcacttcggagcaaacagcaacaaaaaaaaagtccgttagaacc
catactacaataaaaccaattacccccatgatggccacacttgggtctgatatggtaaaa
ggtgatgattggatatttgaacctaagttagatggctatagaatagttgccattacagat
ggttaccataacagtaaattatttactaggaatcaattagactatacgtcaaaatacgaa
aacgtggcggagatcttaaaaaaactcgaccgggcatgcgttttggacggagaagttgta
aagttgaatgatgatggtaagccaagttttaatgcattacaactctttggcaaaaatccc
gtagggaaagttcattattatgtgtttgacctgctgcaacttgatgaacattcattgctt
gaaatgcccttgactgatcgtaaaaagattttggaggcgcttgttaagtcgattgactca
ccctatatcattttcacaccctatgaatcgggtaacgggaataagcttttagaagaggcc
cggaagaacaacagtgaaggcattatggctaaaaaagccgatagcatttaccacccgggt
taccggactaaggaatggatcaaactaaaggtgaaccaggaagatgagtttataattggt
ggatatactgaacctcgcgggaaaaaaggtcttattggtgcttttttattgggtgaaaat
aaaaacgggaacctgaccttttccggaaaatgtggaacaggcttagatgagttgcgcgat
caggagatttatgctacactgaaggattatgaaataactaaatctccattcacaacaaaa
attaccaatgatactaaaatacattggctgaaaccagaattagtttgtacggtcaaatac
tcggagcgtacggaggacggaaaacttaggcatcctgtttttaaagctttaagagaagac
aaaactgttacagatatgaaaccagcggaagataattatgaaattaaggctaatggtaat
aaagtaactatcacgaatcgaaacaaggtttattttccggataatggtattaccaaaggt
gatgttgttgattattatgatactatagctgattatattctcccctatcttaaagatcgc
ccattaagtttacatcgccatcctaatggcatcaatgcgccaagcttctttcagaaagac
attgaaactaaatcctacaattggctaaaaactgtttcaatacactctgagagtaatgat
aaagacattgattatttagtatgcaatgacaaaaaaacattgttgtacatggctaattta
ggttgcatcgaaataaacccatggctatcaaggtatcctggaattgaaaagcctgatttt
ttggtattggatctcgatccggaacagattggttttgaaagtgttattgaagtcgcatta
acaattaaagagcttttggattccttatcaataccatcctacccgaaaacttcaggttcc
acaggaattcatatttatatatataccggtgctaagtatcactatgacagtgtaaaactg
tttgcagaatggctggcaggtaaggcgcatgagctaattccatccatttctagtattgag
cggagtccgcaaaaacgacaaaaaaaagtgtatatcgatttccttcaaaatcgtaagggg
caaaccattgctgctgcctatagtttacgccctaaaccaggtgcaactgtttcctggcca
ttatcatgggatgaagtaactaaagaacttaaaatggaggattatacgattaaaaacgtt
ccgtcattattaaccaaacgaaaaaatccttgggcagatatttattcttctacggtaaat
attgcagctattatgaagaagttgcaggtgtga
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