Solitalea canadensis: Solca_3388
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Entry
Solca_3388 CDS
T02084
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scn
Solitalea canadensis
Pathway
scn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Solca_3388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scn03400
]
Solca_3388
Enzymes [BR:
scn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Solca_3388
DNA repair and recombination proteins [BR:
scn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Solca_3388
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFD08395
UniProt:
H8KX66
LinkDB
All DBs
Position
3992814..3996203
Genome browser
AA seq
1129 aa
AA seq
DB search
MQTIQEILSLYQNDPRLQQLGSLIQLQQQRIHLKGLIGSSDAVLSNALHASTEQTFIFVL
PTYEEAVYFLNDIENISGKSALLFPASYRKPFEFIQPDSGNVLLRAEVLNEIKSKSRLSK
LIATYPEALAEKVISRETLEKNTLDIKVNDKLSIDFINEFLHEYAFERVDFVYEAGQYSV
RGGIVDIFSFSHDLPYRVEFFGDDVESIRTFDPEDQLSVAKMDRITIVPNVQSKLLTDNN
TSFLDYIDENSVLWFKDVTFTYDIIEKGVKKAKDLYKALPDEEKGIHTEWMDPKYLFDES
SAVKRNIDRFTVIEFGKQFTYEPTSVFNFDLKPQPSFNKDFNLLQHNLNENINEDIHNFI
FADSAKQVERLYAIFADLPKEEGAKTKSSGLNEVPFTPINLSIHEGFVDKELKVAFYTDH
QIFDRYYKYKSRKTYTQSQSITLKELRELKPGDFVTHIDHGIGKYAGLQKMEVNGQIQES
IRLVYADNDLLYVNINSLNRISKYTGKDGTQPKLNKLGTDAWDKLKKNTKKKVKDIARDL
IKLYAQRKAKEGYAFMPDTYLQNELEASFIYEDTPDQEKSTADVKKDMEAPHPMDRLVCG
DVGFGKTEVAIRAAFKAVTDSKQVAVLVPTTILASQHYRTFKERLKDFPCNIDYINRFKS
SKQIKETLKKLEEGKVDIIIGTHRLVSKDVKFKDLGLLIIDEEQKFGVTVKEKLKSMRVN
VDTLTLTATPIPRTLHFSLMGARDLSIISTPPANRQPVITELHVFNEKIIKDAVEFEVDR
GGQVFFVHNRVSDIHDVAGLIRKLCKNVKVCVGHGQMEGEDLEDVMADFIEGKYDVLVAT
TIIEAGLDISNANTILINQAHNFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSVLTPEARK
RLSAIEEFSDLGSGFNVAMRDLDIRGAGNLLGSEQSGFIAEIGYEMYHKILDEAVQELKE
DEFSELFKDEKPRPFVSFTTIDTDLELLIPTEYVSSTQERYNLYNELSRVENETELQAFS
DQLIDRFGPYPRQVKELLNTMRLQWLAKDIGFEKLMLKNKTLRGFFIANQQSLYYESDQF
TKVLNYVQTHQRESRLKEGKNALSITFDSVQNIEQAISILAELVGVEVS
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactattcaggaaattctttctctctatcagaacgatcctcgcttacagcaatta
ggatcgttgattcaattacagcaacaacgaattcatttaaaaggattaattggttcgtca
gatgcagtattgtcaaacgctcttcatgcctctacagagcaaactttcatttttgttctg
ccaacttatgaagaagcggtttactttttgaatgatattgaaaacattagcggtaaatca
gcgctattgtttcctgcatcgtatcgaaaaccttttgaatttattcaaccagattcaggc
aatgttttgctaagagcagaagttttaaatgaaataaagtcaaaaagtcgtttatcaaaa
ctaattgctacttatccggaggcgttggcggagaaagttattagcagagagactttagag
aaaaatacgcttgacatcaaagtaaatgataaactcagtattgatttcatcaatgagttt
ttacacgaatatgctttcgaacgtgttgatttcgtttacgaggctggacaatactctgtg
cgtggaggaattgttgatattttctccttctctcatgatctgccttaccgtgtcgagttt
tttggtgatgatgtggaatccattcgaactttcgatccggaagaccagctttcggttgct
aaaatggaccggattaccattgtccctaatgttcagtctaagctgttaacagataacaat
acttcgttcttagattatattgatgagaattcggtgctttggttcaaagatgtaacgttt
acttatgatataattgaaaaaggtgtcaaaaaagcgaaagacctttataaagcacttcct
gatgaagaaaaaggcattcataccgaatggatggaccctaagtatttattcgatgaaagt
tcagctgtaaaaagaaacatcgacaggtttacagtcattgaatttggcaagcagttcact
tatgagccaacttcggtattcaatttcgacttaaaacctcagccttccttcaacaaagat
ttcaacctacttcagcataatcttaacgaaaatattaacgaagatatccataacttcatt
tttgcagatagcgccaaacaggttgaacggttatatgcaatctttgctgatcttccaaaa
gaagaaggtgctaaaacaaaaagttccggattaaatgaagttccttttacgcctataaac
ctttccattcatgaaggttttgtagacaaggaattaaaagtcgctttttatacagatcac
cagatatttgatcgttattataaatataaatcccgtaaaacctatacccaatcccagtcg
attacacttaaagaacttcgtgaactaaaaccgggagactttgttacgcacattgatcat
ggaattggtaaatatgccggtttgcaaaagatggaagttaatggccaaatacaggaatct
atccgattggtatatgccgacaatgatttattgtatgttaacatcaattcattaaaccga
atttctaaatataccggtaaagatggcactcaacctaagttgaataaactaggaacggat
gcctgggacaaactaaaaaaaaacactaaaaaaaaagttaaagacatagcccgtgatctt
attaagctttatgcccaacggaaagcaaaagaaggatatgcttttatgccagacacttat
cttcaaaacgaactagaagcttcgtttatttacgaagatactccagaccaggaaaaatca
actgctgatgttaaaaaagacatggaggcccctcatcctatggatcgattggtttgtgga
gatgtcggtttcggtaaaactgaagtggcaattcgtgcagcatttaaagcagttacagac
agtaaacaagtagccgttttagtaccaactactattcttgcatcacaacattaccgaact
tttaaagaacgtttaaaggatttcccttgtaacattgattatatcaaccgttttaaatca
agtaaacagattaaggaaacacttaaaaaacttgaagaaggtaaagttgatattatcatc
ggaacacatcgcttggtaagtaaagatgtgaaattcaaagaccttggccttctgattatc
gatgaggaacaaaaatttggtgttacagtaaaagaaaaactaaaatcgatgcgggtaaac
gtggatacgctaacgttaacggctactcctattccccgcaccctccatttttcattgatg
ggagccagagatctttcaatcataagtactcctccagcaaacagacagcctgtaataact
gaacttcatgtttttaatgaaaagatcattaaggatgctgttgaatttgaggttgacagg
ggcggacaagtgttctttgttcacaatagggtaagtgatattcatgatgttgccgggtta
attcgcaaactgtgtaaaaatgtaaaagtttgtgttggtcacggacaaatggaaggagaa
gatctggaggatgtaatggctgattttattgaaggcaaatacgatgttttagtggccact
actattatcgaagccggattagatatttccaatgccaataccattttaattaatcaggct
cataatttcggtttaagtgatttacatcagatgcgcggacgggtaggtcgttcaaacaaa
aaagctttttgttatttgttgagtccgccattatctgttttaacccctgaagcccgcaaa
cgattaagtgccatcgaagagttctccgatttaggaagcggctttaatgtggctatgcgc
gatttagatattcgcggagcaggaaacctgttaggctctgaacaaagtggttttattgca
gaaattggatacgaaatgtatcataaaattttggatgaagctgttcaggagttaaaagag
gatgagtttagtgaattatttaaagatgaaaaacctcgtccttttgtaagctttaccaca
attgataccgatcttgaactacttattccaaccgaatacgtaagcagtacacaagagcgc
tataatttatacaatgaactaagtcgtgttgaaaatgagactgaacttcaggccttttca
gatcagttaatcgatcgtttcggtccttacccgcgccaggtgaaggaattactaaacacg
atgcgtttacaatggcttgcaaaagatattggatttgaaaagttaatgctaaagaataaa
acgctacgtgggttctttatcgccaatcagcaatctctttattacgaatcggatcaattt
accaaagtgcttaattatgtgcaaacacaccaaagggaaagccgattaaaagaaggaaag
aatgcactttctattacattcgatagtgttcaaaacattgaacaagcaatctcgatactg
gccgaattagttggcgtggaagtatcctaa
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