Streptomyces coelicolor: SCO3109
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Entry
SCO3109 CDS
T00085
Symbol
SCE41.18c
Name
(RefSeq) transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sco
Streptomyces coelicolor
Pathway
sco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCO3109 (SCE41.18c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sco03400
]
SCO3109 (SCE41.18c)
Enzymes [BR:
sco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCO3109 (SCE41.18c)
DNA repair and recombination proteins [BR:
sco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCO3109 (SCE41.18c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-GeneID:
1098543
Kitasato:
SCO3109
LinkDB
All DBs
Position
complement(3404759..3408313)
Genome browser
AA seq
1184 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAIAAAADGNRMHVDLVGPPAARPFAIAALARETGRPVLAVTA
TGREAEDLAAALRSLLPPEGIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQGADLEEIVQALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRERARVLAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMSV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWSIADVRERARELDMM
WWSVSPFAADETLTSDLDAEGDSDTLKLGMHAPETYRGDTAKALADTKGWLAEGWRAVYL
TEGHGPASRTVEVLGGEGIAARLDNDLEALSPSVVHVSCGSIDHGFVDPALKLAVLTETD
LTGQKAAGREGARMPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV
VEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAA
DLIKLYSARMAAPGHAFGSDTPWQRELEDAFPYVETPDQLTTIAEVKDDMEKTVPMDRLI
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALSRF
QSDTESKATLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLR
ANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEHRQIGAAIRREL
LREGQVFYIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV
STTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETA
HERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADY
RASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEEDVKAVREEL
VDRYGKLPEPVENLLLVAGLRMLARACAVGEIVLQGNNIRFAPVELRESQELRLKRLYPG
SVIKPGTHQVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSILGS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggacaccgccctcgcggaagcgatc
gcggcggccgcagacggcaaccgcatgcacgtcgacctggtcggcccgcccgcggcccgc
cccttcgcgatcgccgccctggcccgcgagacgggccgcccggtgctggcggtgacggcg
acgggacgtgaggcggaggacctggcggcggccctgcgctccctgctgccccccgagggc
atcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccgcgcagcgac
accgtcggccgccgcctcgccgtcctgcggcgcctggcccacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcacccgtgcgctccgtgctccagccgcaggtc
aagggcctgggcgacctggagcccgtggcgctgcgcaccggacagggcgccgacctggaa
gagatcgtccaggccctggcggcagcggcgtacgcgcgcgtcgagctggtggagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccg
ctccgggtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggcctgtgggccccgccctgccgcgagctgctg
ctcaccgacgacgtgcgcgagcgcgcccgcgtcctcgccgaggaccaccccgagctgggc
gaactgctcggcaagatcgccgagggcatcgcggtggagggcatggagtccctggcgccc
gtcctcgtcgacgacatggagctgctcctcgacgtgctgcccaagggctcgatgtccgtg
gtctgcgacccggagcgggtgcgcacgcgggccgccgacctggtggcgacctcgcaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggtgaggcgccgatcgacgtggac
gcggcctccctgtggtccatcgcggacgtccgggagcgggcccgcgagctggacatgatg
tggtggtcggtctcgcccttcgccgccgacgagacgctgacgtccgacctggacgcggag
ggcgactcggacaccctcaagctcggcatgcacgcccccgagacctaccgcggcgacacc
gccaaggcgctggccgacaccaagggctggctcgccgagggctggcgcgcggtctacctc
accgagggccacggccccgcctcccgcaccgtcgaggtgctcggcggcgagggcatcgcc
gcccgcctcgacaacgacctcgaagccctcagcccctccgtcgtgcacgtctcctgcggc
tcgatcgaccacggcttcgtcgacccggcgctcaagctggcggtgctcaccgagaccgac
ctgaccggccagaaggccgccgggcgcgagggcgcgcggatgccggcccggcgccgcaag
accatcgacccgctcaccctggaaacgggtgactacatcgtccacgagcagcacggcgtc
ggccgctacatcgagatggtgcagcgcaccgtccagggcgccacccgcgagtacctggtc
gtggagtacgcgcccgccaagcgcggccagcccggcgaccggctgtacatccccaccgac
cagctggagcagatcaccaagtacgtcggtggcgaggcccccaccctgcaccgcctgggc
ggcgccgactggaccaagaccaaggcccgtgccaagaaggcggtcaaggagatcgccgcc
gacctgatcaagctctacagcgcgcggatggcggcgccgggccacgcgttcggctcggac
accccctggcagcgcgagctggaggacgccttcccctacgtggagacgccggaccagctc
accaccatcgccgaggtcaaggacgacatggagaagacggtcccgatggaccgcctgatc
tgcggcgacgtcggatacggcaagacggagatcgcggtccgcgccgcgttcaaggcggtc
caggacggcaagcaggtcgccgtgctcgtccccaccaccctgctggtgcagcagcacttc
gggacgttcagcgagcgctacgcccagttcccggtgagcgtgaaggcgctgtcccgcttc
cagagcgacaccgagtcgaaggcgaccctggaggggctgcgcgagggctcggtggacatc
gtcatcggcacccaccgcctgttctcctcggagacgaagttcaaggacctcggcctggtc
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgc
gccaacgtcgacgtgctcaccatgtccgcgacccccatcccgcgcaccctggagatggcg
gtcaccggcatccgcgagatgtccacgatcaccaccccgccggaggagcgccacccggtg
ctgaccttcgtcggcccctacgagcaccggcagatcggcgccgcgatccgccgcgagctg
ctgcgcgagggccaggtcttctacatccacaaccgggtcgagtccatcgaccgcgcggcg
gccaagctgcgcgagatcgtccccgaggcccgcatcgccaccgcccacggccagatgtcg
gagcaggcgctggagcaggtcgtcgtcgacttctgggagaagaagttcgacgtgctggtc
tccaccaccatcgtcgagtccggcatcgacatctccaacgccaacaccctcatcgtggag
cgcggcgacaacttcggcctcagccagctccaccagctgcgcggccgggtcggccgtggc
cgcgagcgcggttacgcctacttcctgtacccgccggagaagcccctcacggagaccgcg
cacgagcgcctggccaccatcgcccagcacaccgagatgggcgcgggcatgtacgtggcg
atgaaggacctggagatccgcggcgcgggcaacctgctcggcggcgagcagtccggtcac
atcgccggcgtcggcttcgacctgtacgtgcggatggtcggcgaggccgtcgccgactac
cgggcctccctggagggcggcgtcgaggaggagccgccgctcgaggtcaagatcgagctg
cccgtcgacgcgcacgtcccgcacgactacgcgcccggcgagcggctgcgtctccaggcc
taccggtccatcgcctccgccaacagcgaggaggacgtcaaggccgtacgcgaggaactc
gtcgaccgctacggcaagctgccggagcccgtggagaacctgctgctggtcgccggcctg
cgcatgctcgcgcgggcgtgcgccgtcggcgagatcgtgctccagggcaacaacatccgt
ttcgcgccggtggagttgcgcgagtcccaggagctgaggctcaagcggctctaccccggc
agcgtcatcaagccgggtacgcaccaggtgctcgtgccgcgtccgaagaccgcgaaggtg
ggcggcaagccgctggtcgggcgggaactgctcggctgggtgggcgagttcctgacctcg
atcctcgggtcgtaa
DBGET
integrated database retrieval system
