Streptomyces coeruleorubidus: CP976_18180
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Entry
CP976_18180 CDS
T07302
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scoe
Streptomyces coeruleorubidus
Pathway
scoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP976_18180 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scoe03400
]
CP976_18180 (mfd)
Enzymes [BR:
scoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP976_18180 (mfd)
DNA repair and recombination proteins [BR:
scoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP976_18180 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEV25885
UniProt:
A0A5J6IAW7
LinkDB
All DBs
Position
complement(3948450..3951983)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVSKDAALAEAINAAADGNRMHVDLVGPPAARPFAVAALARDTGRPVLAVTA
TGREAEDLAAALRSLLPPEGIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQTADLNEIVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAQHGLWAPPCRELL
LTEDVRARARALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEELDADTLKLGMHAPETYRGDTAKALADTKGWLADGWRAVFVTEAHGPAA
RTVEVLGGEGIAARHDADLAEISPSVVHVACGSIEHGFVDPALRLAVLTETDLTGQRAAG
RDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGSDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVKALSRFQTDTEAKA
VLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDVKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRVKRLYPGVVIKPAA
HQVLVPRPKTAKVGGKPLVGRDLLAWVGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtaagtaaggacgccgccctcgcggaagcgatc
aacgcggccgcagacggcaaccgcatgcacgtcgacctggtcggcccccctgcggcccgc
cccttcgcggtcgccgccctggcccgcgacacgggccgcccggtgctggccgtgacggcg
accggccgcgaggcggaggacctggccgcggccctgcgctccctcctcccgccggagggg
atcgtggagtacccgtcctgggagacgctcccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgattggccgtgctgcgccgcctggcccacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtggcgcccgtgcggtcggtgctccagccgcaggtc
aagggcctcggcgacctggagccggtcgccttgaggacggggcagaccgccgacctgaac
gagatcgtcgacgccctcgcggccgccgcgtacgcgcgagtggagctcgtggagaagcgc
ggcgagttcgccgtccgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaagtcgcccagcacggcctgtgggcgccgccgtgccgggaactgctg
ctcaccgaggacgtccgcgcgcgtgcgcgtgccctcgccgaggagcaccccgagctcggt
gaactgctcggcaagatcgccgaggggatcgcggtggagggcatggagtccctcgcgccg
gtcctggtcgacgacatggagctgctgctcgacgtgctgcccaagggcgccatggccgtc
gtgtgcgacccggagcgggtccgcacgcgcgcgtcggacctggtggccacgtcgcaggag
ttcctccaggcctcctgggcggccaccgccggcggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtccgggaccgggcccgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgcggacgaggagctcgacgccgacacgctgaagctc
ggcatgcacgccccggagacctaccgcggggacaccgccaaggccctcgcggacaccaag
ggctggctcgccgacggctggcgcgcggtgttcgtcaccgaggcgcacggcccggcggcc
cgtacggtcgaggtgctgggcggcgagggcatcgccgcccgtcacgacgcggacctggcc
gagatctccccgtcggtcgtgcacgtggcgtgcggctcgatcgagcacggcttcgtcgac
ccggccctcagactcgccgtactgaccgagacggacctgaccggtcagcgggcggcgggc
cgcgacggcgcccggatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtgcagggcgcgacccgcgagtacctggtcgtcgagtacgcgcccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccaccctgcaccgcctcggcggcgccgactggacgaagacgaag
gcccgcgcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctctacagcgcc
cgcatggcggcccccggccacgccttcgggtcggacaccccctggcagcgcgagctggag
gacgccttcccctacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtcagggccgccttcaaggccgtccaggacggcaagcaggtggccgtg
ctcgtgcccacgacgctgctggtgcagcagcacttcgggacgttcagcgagcggtacgcg
cagttccccgtgaacgtgaaggcactgtcccgcttccagaccgacaccgaggccaaggcg
gtcctggaaggcctgcgcgagggctcggtggacatcgtcatcggcacccaccgcctgttc
tcgtcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggaacagcgcttc
ggtgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgaccatg
tccgccaccccgatccccaggacgctggagatggccgtgacgggcatccgcgagatgtcc
acgatcacgacccctccggaggaacggcacccggtgctgaccttcgtcggcccctacgag
gagaagcagatcggggccgccatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtcgatcgaccgggccgccgcccggctgcgcgagatcgtcccc
gaggcgcgcatcgccaccgcccacggccagatgtccgagcaggcgctggaacaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctggtgtccacgaccatcgtggaatccggc
atcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgggtgggccgtggccgcgagcgcgggtacgcgtacttc
ctctacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgaccatcgcc
cagcacacggagatgggcgccggcatgtacgtcgcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtacggatggtcggcgaggccgtcgccgactaccgccgccagctggagaccggcgag
atcgaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctcaggctccaggcgtaccgcgccatcgcctccgcc
aacacggaggaggacgtcaaggcggtacgcgaggaactcgtcgaccgctacggcaagctg
cccgaacccgtggagaacctgctgctcgtggccggtctgcggatgctcgcgcgggcgtgc
ggcgtcggcgagatcgtgctccagggcaccaacatccgcttcgcgcccgtggagttgcgc
gagtcgcaggagctgcgggtcaagcggctgtaccccggggtcgtcatcaagccggcagcg
caccaggtgctggtgccgcgcccgaagaccgcgaaggtcggcgggaagccgctggtcggg
cgggatctgctggcgtgggtcggggagttcctgacgtcggtgctgggttcctga
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integrated database retrieval system
