Siccibacter colletis: KFZ77_18020
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Entry
KFZ77_18020 CDS
T08544
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scol
Siccibacter colletis
Pathway
scol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KFZ77_18020 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scol03021
]
KFZ77_18020 (rpoC)
03400 DNA repair and recombination proteins [BR:
scol03400
]
KFZ77_18020 (rpoC)
Enzymes [BR:
scol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KFZ77_18020 (rpoC)
Transcription machinery [BR:
scol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KFZ77_18020 (rpoC)
DNA repair and recombination proteins [BR:
scol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KFZ77_18020 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
UYU31692
LinkDB
All DBs
Position
complement(3773110..3777333)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAKTSLIDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINREGKEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVNGYIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGVQIGAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIMNAGSSEFLEGEQAEYSRIKIANRELEANGKIGVTYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVSAEEASASLAELLNAGLGGNDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggtctgttctgcgcccgt
atctttgggccagtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgtagaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgactgcccatatctggttcctgaaatcactg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcctatgtggttatcgaaggtggcatgaccaacctcgagcgtagccagatcctg
accgaagagcagtacctcgatgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctattcaggcactgctgaagagcatggacctggagcaggagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtgcagtctggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatcttcgtccgctggttccgctggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctcgctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagatgcgctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcccttgccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgcgaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacatccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcatttgagccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggcagttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttaccgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatacgaaaaagatgcaaac
ggcgaattcgttgcgaaaaccagcctgatcgacaccaccgtaggtcgtgcgattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcc
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttt
gctgaccagaccatgtacaccggttttgcctatgcagcgcgctctggtgcgtctgttggt
atcgacgacatggttattccggagaagaagcacgaaatcatctccgaagcggaagccgaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgcgggcgaacgctacaac
aaagttatcgatatctgggccgccgcgaacgatcgcgtatctaaagcgatgatggacaac
ctgcagactgaaacggttatcaaccgtgaaggtaaagaagagcagcaggtttccttcaac
agcatttacatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgcgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttacctgacccgtcgtctg
gtagacgtggcacaggatctggttgtcactgaagacgattgcggcacgctggaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagagccgctgcgcgatcgcgttctg
ggccgtgtaactgctgaagacgtactgaagcctggtaccgcagacattctggttccgcgt
aacaccctgctccatgagcactggtgtgacctgctggaagagaactctgttgactcagtg
aaagtgcgctccgtcgtatcctgtgacaccgacttcggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggcgttatcgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcattcaggtgaaaaacaaaggtagcatccgtctg
agcaacgcgaagtcggttgttaactccagcggcaagctggtggtgacgtcacgtaacacc
gagctgaagctgatcgacgaattcggtcgtactaaagaaagctataaagtgccttacggt
gcggtaatggcgaagggtgatggtgagcaggttgccggcggtgaaaccgttgcaaactgg
gatccgcacaccatgccggtaatcaccgaagtgaacggttacatccgcttcaccgacatg
atcgacggccagaccattacccgtcagaccgacgaactgaccggtctgtcttccctggtg
gttctggactctgcagaacgtactaccggtggtaaagacctgcgtccggcactgaaaatc
gttgatgccaacggcgacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccgggtaaagcgattgtacagctggaagatggcgtacagatcggtgcgggtgatgct
ctggcgcgtattccacaggaatccagcggtaccaaggacatcaccggtggtctgccacgc
gttgccgacctgttcgaagcacgtcgtccgaaagagccggcaatcctggcggaaatcagc
ggtatcatttccttcggtaaagaaaccaaaggtaaacgccgtctggttatcaccccggtt
gatggcagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgagcgcgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtctgcgtggtgttcacgcggtaactcgttacatcaccaacgaagtgcaggacgtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgtgcgtcagatg
ctgcgtaaagcaaccatcatgaacgccggcagctccgagttcctcgaaggtgagcaggct
gaatactctcgcatcaagatcgctaaccgcgaactggaagcgaacggcaagattggcgtt
acctatgcgcgcgatctgctgggtatcaccaaagcctctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
accggttatgcgtaccatcaggatcgtatgcgtcgccgtgctgcgggtgaactcccggct
gcaccgcaggtgagcgcggaagaagcttccgcaagcctggcagaactgctgaacgcaggt
ctgggcggcaacgacaacgagtaa
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integrated database retrieval system
