Snodgrassella communis: PYG29_01475
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Entry
PYG29_01475 CDS
T09364
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
scom
Snodgrassella communis
Pathway
scom01501
beta-Lactam resistance
scom01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
PYG29_01475
01503 Cationic antimicrobial peptide (CAMP) resistance
PYG29_01475
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scom02000
]
PYG29_01475
01504 Antimicrobial resistance genes [BR:
scom01504
]
PYG29_01475
Transporters [BR:
scom02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
PYG29_01475
Antimicrobial resistance genes [BR:
scom01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
PYG29_01475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF
DUF3999
Motif
Other DBs
NCBI-ProteinID:
WMY92076
LinkDB
All DBs
Position
331885..335085
Genome browser
AA seq
1066 aa
AA seq
DB search
MSRFFINRPIFAWVVALFIIIAGIVCITKLPVAQYPTVAPPSITLTIAYPGADAQTIEDT
VLSRIEREMNGLENLDYMEAKSLSNGTGTLTLTFYPGTDDDIAQMNVQNALSRAEPRLPA
MVKQTGVQIAKSRSNFLMVTMYTSDNPNLTPADMADYVARNIQPELQRIDGVGNVMVFGS
ERAIRIWLDSDKLRSVNLTPGTVNAAVAAQNQQISAGSLGALPSPDNIQTTATIVVPGQL
KTVEQFENIIVKANTDGSLVRLKDVARVELGKQDYSTGARLNGKDAVGAGIQLTTKGNAL
ATANAVKAKLADLQKYFPAGMSWSAPYDSSTFVSISIEKVVHTLVEAIVLVFLVMLLFLQ
NIRYTLIPTIVVPIALLGAFAIMYLAGLSINVLTMFAMVLVIGIVVDDAIVVVENVERIM
ADEHLSPKPATEKAMGQISGAVVGITVVLITVFIPMAFFSGSTGNIYRQFSIVMSVAIFF
SAFLALSLTPALCATLLKPIAEHEAEKKGFYGWFNRKFNSGTKKYESKVAYMLHRSVRMF
IIYAILTGCALFVMGRLPTSFLPEEDQGYSIGLIQLPPGATQHRTLDTFKKMEDFTLHQP
EVKNMVSILGFSMTGQGQNVGLSFLVLKDWSERDGAEHSANSLAKRITGAMMGSVRDGYI
FALVPPSIPELGTSTGFSFRLQDRGGKGHEALLAARNQLLGMARESKVLTQVRPDGMEDE
PQLQIDIDRDAANAQGVSFGDITTVLSTALGSNYVNDFPNKGRMQRVIVQADVASRMTPE
DLSKLTVNNAQGQPVPLSGIMKTHWITGPAQTVRYNGYTAMSITGNAAPGYSTGDAMAEM
EKMASKLPDGFGYEWTGLSKEEKDAGNQSTVLYMFSLLAVFLCLAALYESWTIPLSVMLV
VPLGLLGVVLGTWLRGMENDVYFQVGLITVIGLSAKNAILIVEFAKELQEQGKSPLEAAL
AAAHLRFRPILMTSIAFIMGVVPLYFASGASSASQRAIGTSVLWGMLVGTCLAVFFVPVF
YSTVRSLFSRQKNDKGGHTPDNSKNLPITVNSDGSATVQTDKEDKA
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgattttttattaaccgaccgatttttgcatgggtggtggcactgttcatcatc
attgccggtatagtgtgtattaccaagctacctgttgcccagtatccgactgtagcacct
ccttccattaccctgaccattgcctatccgggtgccgatgcccagactattgaagatact
gtattgtcgcgtattgaacgtgagatgaatggtctggaaaatctggattatatggaggcc
aaatcactgtccaatggtacaggtacattaaccttaactttctatccgggtaccgatgac
gatatcgcccagatgaatgtgcagaatgccttgtcacgggcagagccgcgtttgcctgcc
atggtgaaacagactggtgtacagattgccaaatcacgcagtaacttcctgatggtaacc
atgtataccagtgataatcccaacctgacaccggcagacatggcagactacgtggcacgt
aacattcagccggaattacagcgtattgatggtgtgggtaacgtaatggtgttcggttcc
gaacgtgccatacgtatctggctggattcagacaaattacgtagcgtgaatctgacaccg
ggcactgttaatgctgcggtggcggcacagaaccagcaaatttctgccggtagtctgggc
gccttgccatctcctgacaatattcagaccacagcgaccattgtcgttcccggccagcta
aaaacagttgaacagtttgaaaatattattgtcaaagccaataccgatggttcgctggta
cgcctaaaagatgttgcccgggtagagctgggtaaacaggattactctactggtgcgcgt
ctgaatggtaaagacgcggtaggtgccggtattcagctaaccaccaaaggtaatgcattg
gcaacagccaatgccgttaaggccaaactggccgatttgcagaaatatttcccggctggc
atgagctggtctgctccgtatgacagctctacttttgtgagtatttccattgaaaaagtg
gtacatacattggtagaagccatcgtactggtattcttagtgatgctgctgttcctgcaa
aatatccgctacaccctgattccgaccattgtagtaccgattgccttgctgggtgccttt
gccatcatgtatcttgccggcttgtcaattaacgtactgaccatgtttgccatggtgctg
gtaatcggtattgtggttgatgatgccatcgtggtggtggaaaacgttgagcgtattatg
gcggatgagcacttatcgcctaagccggctaccgaaaaagccatgggacagatttccggc
gccgtggtaggtattaccgtggtactgattactgtatttatcccgatggcgtttttctct
ggttctaccggtaatatttaccgccagttctctatcgttatgtcagtggcgatcttcttc
tctgcttttctagcactgtctttgacaccggctctgtgtgccactttgctcaagccgatt
gccgaacacgaggccgagaaaaaaggtttctatggctggtttaaccgcaaatttaacagt
ggcaccaaaaaatacgaatccaaagtagcatacatgctgcatcgcagtgtgcgcatgttt
atcatctatgccattcttaccggctgtgcactgtttgtgatggggcgcctgccgacttca
ttcctgccggaagaagatcagggttactctatcggattgattcagttaccaccgggcgct
acccagcatcgtacactggataccttcaagaaaatggaagatttcacgctccatcagcct
gaagtgaaaaatatggtatcaatattgggcttcagtatgactggtcaggggcagaacgta
ggtttgagctttctggtactgaaagactggtctgagcgtgacggcgcagaacacagtgcc
aactcactggccaaacgcattaccggtgccatgatgggttcagttcgtgatggttatatc
tttgcactggtgccaccatccatccctgaactcggtaccagtaccggtttcagcttccgc
ctacaggatcgtggtggtaaaggccatgaagcattactggcagcacgtaaccagctactg
ggcatggcgcgtgaaagcaaagtgctgacacaggtacgtccggatggcatggaagacgaa
cctcaattacagattgatatcgaccgtgatgcagctaatgcacaaggtgtttcatttggt
gatatcaccaccgtactgagtaccgcactgggttccaattacgtaaacgacttcccgaat
aaagggcgtatgcagcgcgtgattgtacaggccgatgtagcctctcgcatgacaccggaa
gacctgagcaaactcactgttaacaatgcacagggacaacccgttcccttgtctggcatc
atgaaaacccactggatcaccggtccggcgcaaacagtccgctacaacggttataccgcc
atgtctattaccggtaatgcagctccgggttacagtactggtgatgccatggccgaaatg
gaaaaaatggccagcaaactgcctgatggttttggttacgaatggacaggtctgtccaaa
gaggaaaaagacgccggtaaccagtctaccgtcctctatatgttctccctgctggccgta
ttcctctgtctggccgcactgtacgaaagctggacaatcccactgtctgttatgctggtg
gtaccacttggtctgcttggcgtagtattgggcacatggctgcgtggcatggaaaacgac
gtctattttcaggtggggctgattaccgtgattggtttgagtgctaaaaacgccattctg
attgtggaatttgccaaagagctgcaagagcagggcaaatccccgctggaagcagcactg
gctgctgcacacctgcgtttccgcccgattctgatgacctctatcgccttcattatgggt
gtagtaccgttgtattttgccagtggtgcctcttctgccagtcagcgtgcaattggtacc
agcgtattgtgggggatgttagtaggtacctgtctggccgtattctttgtgcccgtgttc
tactcaactgtacgtagcctgttcagcagacaaaagaacgataaaggtggtcatacgcct
gataacagcaaaaacctgcccattaccgtaaacagtgatggcagcgcgaccgtacagaca
gacaaagaggataaagcatga
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