Spiroplasma corruscae: SCORR_v1c08350
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Entry
SCORR_v1c08350 CDS
T05302
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scou
Spiroplasma corruscae
Pathway
scou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCORR_v1c08350 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scou03019
]
SCORR_v1c08350 (rnj)
Messenger RNA biogenesis [BR:
scou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCORR_v1c08350 (rnj)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ASP28607
UniProt:
A0A222EQ06
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Position
complement(989617..991338)
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AA seq
573 aa
AA seq
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MEEIKFMALGGQDERGKNLFIVSVGEQLFIFDSGMKFPERSVLGIDVVIPNFDFLKENVK
KIKGIFISNPSSSNAGSISYILRDIDVPVYCNELTTIVLKYRNLKYRIKNRENNFKIIKD
KDVLKFDKDVSVEVFRTTSMFPESFGFAIHTKVGSIVYAGDYIMDGTEQSYFSTDMNHLT
QISKKGVLSLISDSEFASRNGYTVPNHRIEKFITGPMKDKKKRLILGLFEEDVFKLFEII
NQAKQNDRKIAIYGKTIAKVLESKTIQESLKFYEENIITTDEFMKSTDGILLITGAGDLL
YSRLAKIAAGNDDTVEFTENDTIILATPPSSGVEKRHAEILDELARTNAKLISLSDRNIW
TMRASYEDIKLMTRIMKPKSFIPVKGLHKDFLSAEQAAIEAGVIPENIALIKNGQVLKIN
HDGKLVISNQKIKNADIFVDGIGAGDIGAIVLNERKQLATDGAVIIGANLNDKTKELCSL
IDIQMRGVVYIVDDNPIFKLMQKQIVDILNKAREEWKIKPDSFDLNQIKKDIVSKVRSIL
RQETGKQPIVLVIVNELTNSNYEPKVRQKYNNT
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaattaaatttatggccttaggtggtcaagatgaaagaggtaaaaacctattt
atagttagtgttggggaacaattatttatttttgattcaggtatgaaatttcctgaaaga
agtgtattaggtatcgatgttgttataccaaactttgattttttaaaagagaatgttaag
aaaataaaaggtatatttatttcaaatccaagttcaagtaacgctgggtctattagttat
attttaagagatattgatgttccggtttattgtaatgaattaactacaattgttttaaaa
tatagaaatcttaaatatagaatcaaaaatagggaaaataattttaagataataaaagat
aaagatgttttaaagtttgataaagatgtaagtgtagaagtttttagaactacttcaatg
tttccggagtcttttggttttgcaattcacacaaaagtaggaagtatagtttatgctggt
gactatattatggacggtacagagcaatcgtatttctctactgatatgaatcatttaaca
caaatatcaaaaaaaggggttttatcattaataagtgattcagaatttgcgtcaagaaat
ggttatacagtaccaaatcatagaattgaaaaattcattactggtccaatgaaggataag
aagaaacgattaatacttggtttatttgaagaagatgtttttaaattatttgaaataatc
aatcaagcaaaacaaaatgatagaaaaattgcaatatacgggaaaacaatagcgaaagta
ctagagtcaaaaactatacaagaaagtttaaaattctatgaagaaaatattattacaact
gatgaatttatgaaatcaacagatggaatattgttaataactggtgcaggtgatttactt
tattcaagattagcaaaaatagcagcaggaaatgatgacacagtagaatttacagaaaac
gacacaattattttagcaacaccaccttcatctggtgttgaaaaaagacacgcagaaatc
ctagatgagttagccagaactaatgctaaacttatttctctatctgatagaaacatatgg
acaatgagagctagttatgaagatataaaacttatgacaaggataatgaaaccgaagtca
ttcattccagttaaaggtttacacaaagactttttatcagcagaacaagcagcaattgaa
gcaggagtgataccagaaaatattgcattgataaaaaatgggcaagttttaaagatcaat
catgatggtaagttagttatttcaaatcaaaaaattaaaaatgcagatatctttgtagat
ggaattggtgcaggagatattggcgctattgtcttaaatgagcgtaagcagttagctact
gatggtgctgtaattattggtgcaaatttaaatgataagactaaggaactttgctcatta
attgatattcaaatgagaggtgttgtttatattgttgacgataacccaatatttaaacta
atgcaaaaacagatagttgatattcttaataaagcaagagaagaatgaaaaattaaacca
gactcatttgacttaaaccaaataaaaaaggatatagtttcaaaggtaagatctattctt
agacaagaaactggcaaacaaccaatagtacttgtaattgtaaatgaattaacaaattct
aattatgaacctaaagtaagacaaaaatataataatacataa
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