Streptococcus parasanguinis ATCC 15912: HMPREF0833_11221
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Entry
HMPREF0833_11221 CDS
T01545
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
scp
Streptococcus parasanguinis ATCC 15912
Pathway
scp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HMPREF0833_11221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scp03400
]
HMPREF0833_11221
Enzymes [BR:
scp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HMPREF0833_11221
DNA repair and recombination proteins [BR:
scp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMPREF0833_11221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
UvrD_C_2
SH3_13
AAA_11
Viral_helicase1
DEAD
UvrD-helicase
HHH_5
AAA_22
nSTAND3
UvrD_C
RsgA_GTPase
Herpes_Helicase
T2SSE
AAA_28
5_3_exonuc
AAA_29
ATP-cone
Zeta_toxin
SLFN-g3_helicase
TsaE
PIF1
TrwB_AAD_bind
NTPase_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEH56252
UniProt:
F8DK98
LinkDB
All DBs
Position
1273038..1275473
Genome browser
AA seq
811 aa
AA seq
DB search
MMEYYFSGTIERIIFENPSSFFRILLLDISDTDAEDFDDFEIIVTGTMADIMEGEDYTFW
GELVHHPKYGEQLKISRYERAKPSSKGLVKYFSSDHFKGIGLKTAQKIVDLYGDNTIDKI
LEAPEKLEEITGLSKKNRLAFVEKLRQNYGTERILAQLANYGIPNKLAFQIQDFYKEETL
QIVEQQPYQLVEDIQGMGFKIADQLAEELGIASDAPERFRAGLIHSLFSYSIETGNTYIQ
AKDLLRYTIDLLESARPVELDPSTVAQELGHLIEEDKVQNVDTKIFDNSLFFAEEGIRSH
IGRLLEKGKKASFDPEKINQAIEEVEKDLGIRYDAIQKEAIHQAIQNKVFILTGGPGTGK
TTVINGMISVYAQLHQLDLRKKKDLPILLAAPTGRAARRMNELTGLPSATIHRHLGMTGD
DDTSHLEDYLDADFIIVDEFSMVDTWLANQLLSNIATDTKLLIVGDADQLPSVSPGQVLA
DLLQIPSIPQTKLEHIFRQSEDSTIVSLAGDIRQGKLPQDFTERKADRSYFEAGSEHIPK
MIEQITSAALRSQIPARDIQVLAPMYKGQAGIDNINTLMQDLLNPAVKDQVVFDTPDCQY
RDGDKVIHLVNDAESNVFNGDIGYITDLLPGKYTESKQDELTIQFDGNEIVYPRNEWYKI
RLAYAMSIHKSQGSEFPVVILPITNQSHRMLQRNLIYTAITRSKSKLILLGEYSAFDYAT
KNTGTARKTYLVERFKDLDGGEATKDSSSSVDTASATVESARSKEGTVETKTEPDEPTVY
RLTEDNLHTISPMIGLTEEEIAAFFDVKQPN
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgatggaatattatttttctggtactattgagcgcattatttttgaaaatcctagcagt
ttttttcgaatcctcttactcgacattagcgatacagatgcagaagactttgatgatttt
gagatcattgtgacaggcaccatggcagatatcatggaaggcgaagactacaccttctgg
ggggagctggtccatcatcctaaatacggagaacaactcaaaatcagtcgctatgaacgt
gccaaaccctctagcaagggcttggtgaaatatttttccagcgatcacttcaaaggaatt
ggtctcaaaacggctcaaaaaatcgtggacctctatggggacaataccattgacaaaatt
ctggaagctcctgaaaaattagaagaaattactggtctctccaagaaaaaccgcctagct
tttgtggaaaaacttcgtcagaattacggaacggaacgcattctcgcccaactagccaat
tatggcattcccaataaattggcctttcagatccaggatttctacaaggaagaaactctc
cagatcgtggagcaacagccctaccaattggtggaagacatccaaggtatgggctttaaa
atcgcggaccaactagcagaagaattgggtattgcaagtgacgctcccgagcgtttccga
gcaggtctgatccacagcctctttagctactctatcgagactggaaatacctatatccaa
gccaaggacctcctgcgctataccattgaccttctagaatcagctcgtccagtagaattg
gatccttccactgtcgcccaagaattaggccacctcatcgaggaagacaaggtccaaaac
gtggacaccaagatctttgacaacagccttttctttgcggaagaagggattcgcagccat
attggccgattgctggagaagggtaaaaaagcttcgtttgaccctgagaaaatcaaccaa
gctatcgaggaggttgaaaaagatctggggattcgctacgatgcgattcaaaaagaggcg
attcaccaagctatccaaaacaaggtctttatcctcaccgggggaccagggacaggaaag
actaccgttatcaatgggatgatcagcgtctatgcccaactccaccagctggatcttcgg
aagaaaaaagacctgccgatcctgctggctgccccaacgggacgagcagctaggcgcatg
aatgagctgacaggacttccgagtgccactatccaccgccatttggggatgactggggat
gatgacaccagccacttagaggactatctggatgcagactttatcattgtggacgaattt
tccatggttgatacctggctggctaatcaattacttagcaacatcgcaacagatacgaaa
ctcttgattgtgggggatgccgaccaattaccttccgtcagccctggtcaggtcttggct
gatctcttgcagatcccaagcatccctcagaccaaactcgaacatattttccgtcagagt
gaggactcgaccattgtctcactagcaggagacattcgccaaggcaagctacctcaagat
ttcacagaacgaaaagctgaccgctcttatttcgaagctggaagcgaacacatccctaag
atgatcgaacaaatcacttctgctgcccttcgtagtcaaatccctgctcgagatatccaa
gtcttggcacccatgtacaagggccaggccggcattgacaatatcaatacgctcatgcaa
gaccttctcaatccagctgtcaaagatcaggttgtttttgacacaccagactgccaatac
cgcgatggagacaaggtcatccatctggtcaatgatgcagaaagcaatgtctttaacgga
gatattggctacatcaccgatcttctcccaggaaaatatacagaatccaagcaagatgaa
ttgaccatccaatttgatggcaatgaaatcgtctacccgcgcaatgaatggtacaagatt
cgcttagcctatgcaatgagtattcacaaatcgcaaggaagcgagtttccggtggtgatt
ctacccattaccaatcaaagccaccggatgttgcaacgtaatttgatctatactgccatc
acgcgctctaagagcaagctgattctcttaggggaatacagcgcctttgattacgccact
aaaaatactggtactgcgcgcaagacctacttggttgaacgctttaaggacctggacgga
ggcgaggcgaccaaggactcttcttcatccgttgacaccgcttctgctacagtcgaatcc
gcacgaagcaaggaagggactgttgaaacgaagactgagcctgatgaaccgactgtctat
cgactgactgaagacaatctccacaccatctctcctatgatcggactgactgaagaagag
attgcagccttttttgatgtcaaacaacctaattga
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