Sorangium cellulosum So0157-2: SCE1572_09695
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Entry
SCE1572_09695 CDS
T02718
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCE1572_09695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scu03400
]
SCE1572_09695
Enzymes [BR:
scu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCE1572_09695
DNA repair and recombination proteins [BR:
scu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCE1572_09695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AGP34760
UniProt:
S4XS85
LinkDB
All DBs
Position
2672602..2674962
Genome browser
AA seq
786 aa
AA seq
DB search
MGLREYWRKRDFSITPEPRGQEATAAPAEGEERAFLIQKHAASHLHYDFRLELEGVLKSW
SVPKGPSLDPEVKRLAMHTEDHPLEYGDFEGIIPRGQYGGGTVLLWDRGTWVPLENPHKG
YHAGKLKFLLRGEKLRGGFTLVKTRGRDDDEGRSWLLIKENDAEARATKEYSVVDARPES
VASGRQLDEIAAAKDRVWHSNRAEKESKNEKAAGGGRGARRDGGFARVAGRVEGAREAAM
PRKVRPQLPERLAASKAKGKPRGAPEGEGWLHEIQVDGHRIMAWVEDGRVRLVDEKGKEQ
EGRFEHIAAAIAGLGLKSALLDGEVAVLRRDGTTAPPPSSAKAAPREGEVVYFVFDLLYL
EGHDLMASPLAARKQALERLLRDASKGGGALRYGDHVEGSWEEVVQKGCQLSLKGIVSKR
VDAPYVPGRGPGWVRVSCSSAPVGEKGKRKAAAPKASERAAPKASERAAPRKSAGGRSRQ
ARDAEEGDGASVAGVRLSHPDRVLYPSQGITKRELALYYESVAGWMVPQVKGRPLTLVRC
PEGTESECVFMKHAKVWGPSALRRVTIQEKTKAGEYLVADSAEALVSLAQMGILEIHTWN
STTSRLEKPDRVVFDLDPDPSVAWERVIAAALLLRERLAELGLESFVKTTGGKGFHIVVP
LTPSSGWDECLAFTKALAGDIARRDPKGYTIAVSKAQRKGKIFIDYLRNTRGATSVAAYS
ARARPGAPVSAPLSWDELGPEMRSDRFTLRSLPERLASLREDPWAGYGEVGQKITAAMRR
ALRMPA
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgggactgcgcgagtactggcgtaaacgcgacttctccatcacacccgagccgcgggga
caagaggccaccgccgcgcccgccgagggcgaggagcgggccttcctcatccagaagcac
gccgcctcgcacctgcattacgatttccgcctcgagctcgagggtgtcctcaagagctgg
tcggtgccgaaggggccgagcctcgaccccgaggtcaagcggctcgccatgcacaccgag
gatcacccgctcgagtatggcgacttcgagggcatcatcccgcgagggcagtacgggggt
gggacagtgctcctgtgggaccggggcacgtgggtgccgctcgagaacccgcacaaggga
tatcacgccggaaagctgaagttcctcctgcggggcgagaagctccgcggcggcttcacc
ctcgtgaagacccgcgggcgggacgacgacgaggggaggagctggctgctcatcaaggag
aacgacgcggaggcgcgcgccacgaaggagtacagcgtcgtggacgcccggcccgagagc
gtggcgagcgggcggcagctcgacgagatcgccgccgccaaggaccgggtgtggcactcg
aaccgggccgagaaggagagcaagaacgagaaggcggcgggcggcgggcgtggggcgcgg
cgcgacggcggtttcgcgcgcgtcgcggggcgggtggagggcgcgcgcgaggcggcgatg
ccgcggaaggtgcggccgcagctgcccgagcggctcgcggcgagcaaggcgaagggcaag
ccgaggggggcgccggagggcgaggggtggctgcacgagatccaggtcgacggccaccgg
atcatggcctgggtcgaggacgggcgcgtgcggctcgtggacgagaaggggaaagaacag
gagggccgtttcgagcacatcgccgcggcgatcgcggggctcgggctgaagagcgcgctg
ctcgacggcgaggtggcggtgctccggcgcgacggcaccacggccccgccgccgtccagc
gcgaaggccgcgccccgggagggcgaggtcgtctacttcgtcttcgatctcctgtacctg
gagggccacgatctcatggcgtcgcccctcgcggcgcggaagcaggcgctggagcggctg
ctccgcgacgcgagcaagggcgggggcgccctgcgctacggcgatcacgtcgaggggtcg
tgggaggaggtggtccagaaggggtgccagctgtcgctgaaggggatcgtgtccaagcgg
gtcgacgcgccctacgtgcccggccgcggtccgggctgggtccgcgtgtcgtgcagcagc
gcgccggttggggagaaggggaagaggaaggcggcggcgcccaaggcgagcgagcgcgcg
gcgcccaaggcgagcgagcgcgcggcgcccaggaagagcgccggggggcgctcgcggcag
gcgcgcgacgcggaggagggcgacggcgcctcggtcgccggggtgcgcctgtcgcacccg
gaccgggtgctgtacccgtcgcaggggatcacgaagcgcgagctcgcgctttactacgag
tcggtcgccggctggatggtgccgcaggtgaagggcaggccgctcacgctggtgcgctgt
ccggagggcacggagagcgagtgcgtcttcatgaagcacgcgaaggtgtgggggccgtcc
gcgctccggcgcgtgacgatccaggagaagacgaaggcgggcgagtacctcgtcgcggac
tcggccgaagcgctggtgtcgctcgcgcagatggggatcctggagatccacacgtggaac
tcgacgacatcgcggctggagaagccggatcgggtggtgttcgacctcgacccggatccc
tcggtggcctgggagcgcgtcatcgcggccgcgctcctgctcagggagcgcctcgccgag
ctcggcctcgagagcttcgtgaagacgacgggcgggaaggggttccacatcgtggtgccg
ctcacgccttcgagcgggtgggacgagtgcctcgcgttcacgaaggcgctggcgggggac
atcgcgcggcgcgatccgaaggggtacacgatcgcggtgtcgaaggcgcagcggaagggg
aagatcttcatcgactacctgcgcaacacgaggggcgcgacgtcggtggccgcgtactcg
gcgcgcgcgcggccgggggcgccggtgtcggcgccgctctcctgggatgagctcggcccc
gagatgcgctcggaccgattcacgctcaggagcctgcccgagcgcctggcgtcgttgcgg
gaggacccgtgggccggctacggggaggtcggtcagaagatcacggccgcgatgcggcga
gcgctgcggatgccggcgtag
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