Streptomyces sp. CdTB01: AS200_12975
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Entry
AS200_12975 CDS
T04240
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scx
Streptomyces sp. CdTB01
Pathway
scx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS200_12975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scx03019
]
AS200_12975
03400 DNA repair and recombination proteins [BR:
scx03400
]
AS200_12975
Enzymes [BR:
scx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AS200_12975
Messenger RNA biogenesis [BR:
scx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AS200_12975
DNA repair and recombination proteins [BR:
scx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AS200_12975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
ALV32860
UniProt:
A0A0U3PZG6
LinkDB
All DBs
Position
2963038..2965203
Genome browser
AA seq
721 aa
AA seq
DB search
MEHTSNAELRAAADAVLARLVGDAGGTARLREDQWRAIEALVAEKRRALVVQRTGWGKSA
VYFVATSLLRAQGSGPTVIVSPLLALMRNQVEAAARAGIHARTINSANTEEWGTVEAEIA
AGEVDVLLVSPERLNNPDFRDQVLPKLAAATGLLVVDEAHCISDWGHDFRPDYRRLRTML
SDLPPGVPVLATTATANARVTADVAEQLGTGGTSDALVLRGPLDRESLSLSVLRLPDAAH
RMAWLADHLDDLPGSGIIYTLTVAAAEEVTAFLRHRGHPVASYTGKTENADRQQAEDDLL
ANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGQE
DEAIWEYFASLAFPSEDLVRRTLDVLAQADRPLSLPALEPLVELRRSRLESMLKVLDVDG
AVRRVKGGWTATGQPWTYEAERYAWVARQRKAEQQAMREYASTTDCRMEFLQRQLDDEGA
KPCGRCDNCAGARFTADMSTTAVDAARADLGRAGVEVEPRRMWPTGLPAIGVDLKGRILA
GEQAAAGRALGRLSDIGWGNRLRPMFTPQAADEPVPDDVAKAVVGVLADWAKGPGGWAPG
VADAQPRPVGVVSVASRTRPRLIGSVAARIAEVGRLPLLGSVEYTDDAPRLSRSNSAQRL
KALAGALTVPPALATALAEAGGPVLLVDDYTETGWTLAVAARALRRAGAQGVLPLVLAVQ
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggagcacacgagcaacgcggaactccgggccgccgccgacgcggtcctcgcccgcctg
gtgggggacgccggtggtacggccaggctgcgcgaggatcagtggcgggcgatcgaggcg
ctggtcgccgagaagcgccgggcgctcgtcgtgcagcgcacggggtggggcaagtcggct
gtctatttcgtggccacgtcgctgctgcgggcccagggcagcggcccgacggtgatcgtc
tccccgctgctcgcgctgatgcgcaaccaggtcgaggccgcggcccgggcgggcatccac
gcccggacgatcaactccgccaacacggaggagtggggcaccgtcgaggccgagatcgcc
gcgggcgaggtcgacgtcctgctcgtgagcccggagcggctgaacaacccggacttccgg
gaccaggtgctgcccaagctggccgccgccaccggactgctcgtggtggacgaggcgcac
tgcatctccgactgggggcacgacttccgtcccgactaccgccggctgcgcaccatgctc
agcgatctcccgcccggcgtccccgtactggcgaccaccgccacggccaacgcccgggtg
accgccgacgtggcggaacagctcggtacgggcggcacgtcggacgccctggtgctgcgc
ggtccgctcgaccgggagagcctgagtctgagcgtgctgcggctgccggacgccgcgcac
cggatggcctggctcgccgaccatctcgacgacctgccgggctcgggcatcatctacacg
ctcaccgtggccgccgccgaggaggtcaccgctttcctgcggcaccgcgggcacccggtg
gcctcgtacaccggcaagacggagaacgcggaccggcagcaggccgaggacgacctcctc
gccaacagggtgaaggccctcgtggccacgtccgcgctcggcatgggcttcgacaaaccg
gacctcggcttcgtggtccatctcggctcgccctcctcccccatcgcctactaccagcag
gtggggcgcgccggacgcggcgtcgagcacgccgaggtgcttctgcttcccgggcaggag
gacgaggcgatctgggagtacttcgcctcgctcgccttcccgtcggaagatctcgtacgc
cgcaccctggacgtcctcgcgcaggcggaccgcccgctgtccctgcccgctctggaaccc
ctggtggagctgcgccgctcgcggctggagagcatgctcaaggtgctcgacgtcgacggg
gcggtcaggcgggtcaagggcggctggaccgccaccggacagccctggacgtacgaggcg
gagcggtacgcctgggtggcgcgacagcgcaaggccgagcagcaggcgatgcgcgagtac
gcgtcgacgacggactgccggatggagttcctgcagcgtcagctggacgacgagggcgcc
aagccctgcggacgctgcgacaactgcgcgggcgcgcggttcaccgcggacatgtccacg
acggcggtggacgcggcgcgtgccgatctcggcagggcgggcgtcgaggtggagccgcgc
cggatgtggccgacggggctgcccgcgatcggcgtcgatctcaaggggcgcatcctggcc
ggcgaacaggccgccgccgggcgggctttgggccgtctgtcggacatcggctggggcaac
cgcctgcgccccatgttcacgccccaggccgccgacgaaccggtgccggacgacgtggcg
aaggccgtcgtgggagtactggccgactgggccaaggggcctggtggctgggccccgggc
gtggcggacgcacagccccgcccggtcggcgtggtcagcgtcgcctcacgtaccaggccc
cggctgatcggctccgtggccgcgcgtatcgcggaggtgggccggctgccgctgctgggc
tcggtggagtacacggacgacgcgccgcggctctcccgcagcaacagcgcccagcgcctc
aaggccctggccggcgcgttgaccgtgccgcccgccctggccactgccctcgcggaggcc
ggcggtccggtcctcctcgtcgacgactacaccgagacgggctggacgctcgcggtcgcg
gcccgcgcgcttcgccgggccggtgcgcagggggtgctgcccctggtgctggcggtgcag
gggtga
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