Streptomyces cyanogenus: S1361_16720
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Entry
S1361_16720 CDS
T07416
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scyg
Streptomyces cyanogenus
Pathway
scyg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
S1361_16720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyg03400
]
S1361_16720 (mfd)
Enzymes [BR:
scyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
S1361_16720 (mfd)
DNA repair and recombination proteins [BR:
scyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
S1361_16720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QTD98997
LinkDB
All DBs
Position
complement(3757207..3760737)
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AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAIQAAVDGNRPHVDLVGPPAARPFAVAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGQSADLNDVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEELDTDTLKLGMRAPETYRGDTARALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGIAARLDSDLGELSPSVVHVSCGSIEYGFVDPALELAVLTETDLSGQRAAG
RDGTRMPARRRKTIDPLSLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLVCGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVRALSRFQSDTEAKA
VLEGLKEGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGG
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEEDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAV
HQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggaccccgccctcgcggaagcgatt
caggcggcggtggacggcaaccgcccgcacgtcgacctcgtcggccccccggcggcccgc
cccttcgcggtcgccgccctcgcccgcgaggccggccgcccggtgctcgcggtcacggcg
acgggccgcgaggccgaggacctggcggcggccctgcgctccctcctgcccccggagggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctcgcccacccccgtcccgacgacccc
gagaccgggccggtctccgtcgtcgtggcacccgtgcgctccgtgctccagccgcaggtc
aagggcctgggcgacctggagccggtgtccctgcggaccggccagagcgcggacctgaac
gacgtcgtcgaagccctcgcggcggcggcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtacgcggcggcatcctggacgtcttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcgctccctcgaagtcgccgaacacggcctgtgggcgcccccgtgccgcgagctgctg
ctcaccgacgacgtccgggcccgcgcgcgtgccctcgccgaggagcacccggagctgggc
gaactcctgaacaagatcgccgagggcatcgcggtcgagggcatggagtccctcgccccg
gtcctggtggacgacatggagctgctgctcgacgtgctgcccaagggcgccatggccgtc
gtctgcgacccggagcgggtccgtacccgcgccgccgacctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgccggcggcggcgaggccccgatcgacgtcggc
gccgcctccctgtggtccatcgccgacgtccgcgaccgcgcgcgcgaactcgacatgatg
tggtggtcggtgtcgcccttcgccgccgacgaagaactcgacaccgacaccctcaagctc
ggcatgcgcgcccccgagacctaccgcggcgacaccgcgcgggccctcgccgacaccaag
ggctggctcgccgacggctggcgcaccgtgttcgtcaccgagggccacggcccggccgcg
cgcacggtggaggtgctcggcggcgagggcatcgcggcccgcctcgactccgacctcggc
gagctgagcccctccgtggtgcacgtctcctgcggttcgatcgagtacggcttcgtggac
ccggcgctcgaactggccgtgctcaccgagaccgacctgtccggccagcgcgccgccggc
cgcgacggcacccgcatgccggcccgccgccgcaagaccatcgacccgctctccctggag
ccgggcgactacatcgtccacgaacagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgcgagtacctggtcgtggagtacgcgcccgccaagcgc
ggccagcccggcgaccgcctctacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcacccaccctgcaccgcctcggcggcgcggactggacgaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctgtacagcgcg
cgcatggccgcccccggccacgccttcggcgccgacaccccctggcagcgcgagctggag
gacgccttcccctacgcggagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccgcctggtctgcggcgacgtcggctacggcaag
accgagatcgccgtacgggccgccttcaaggccgtacaggacggcaagcaggtcgccgtc
ctcgtccccacgaccctgctggtgcagcagcacttcggcacgttctccgagcggtacgga
cagttcccggtcaacgtgcgcgcactgtcccgcttccagagcgacaccgaggccaaggcc
gtcctggagggcctgaaggagggctcggtggacgtcgtcatcggcacccaccgcctgttc
tcctccgagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgacgatg
tccgccaccccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccacgcccccggaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagaagcagatcggcgccgccatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtggagtccatcgaccgcgcggcggcccgcctgcgcgagatcgtcccc
gaggcgcgcatcgccaccgcccacggccagatgtccgaggccgccctggagcaggtcgtg
gtcgacttctgggagaagaagttcgacgtgctggtgtccaccacgatcgtggagtccggc
atcgacatctccaacgccaacaccctgatcgtggaacgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgggtcggccgcggccgcgagcgcgggtacgcctacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcggctcgccaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggccgtcgccgactaccggcgccagctggagaccggcggg
atcgaggaggagccgccgctggaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcccccggcgagcgcctccgcctccaggcctaccgctccatcgcctccgcc
aactccgaggaggacatcaaggccgtccgcgaggaactcaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggccgggctgcggatgctcgcgcgcgcgtgc
ggcgtcggcgagatcgtcctgcagggcaccaacatccgcttcgcgccggtggaactgcgc
gagtcgcaggagctgcggctcaagcggctctacccgggcacggtcatcaagcccgccgtg
caccaggtgctggtcccgcgcccgaagaccgcgaaggtgggcggcaagccgctggtcggc
cgcgaactgctggcctgggtcggcgagttcctcacctcggtcctggggtag
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