Shewanella cyperi: JYB88_00620
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Entry
JYB88_00620 CDS
T07829
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
scyp
Shewanella cyperi
Pathway
scyp01501
beta-Lactam resistance
scyp01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JYB88_00620
01503 Cationic antimicrobial peptide (CAMP) resistance
JYB88_00620
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scyp02000
]
JYB88_00620
01504 Antimicrobial resistance genes [BR:
scyp01504
]
JYB88_00620
Transporters [BR:
scyp02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JYB88_00620
Antimicrobial resistance genes [BR:
scyp01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JYB88_00620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ACR_tran
MMPL
Motif
Other DBs
NCBI-ProteinID:
QSX30217
UniProt:
A0A974XKQ9
LinkDB
All DBs
Position
complement(142508..145600)
Genome browser
AA seq
1030 aa
AA seq
DB search
MDLTTQSTRNPAATLVALLLILIFGVLAVAKLPIQLLPDIHQPQISVFNGWRAAAPQEME
SNIIEPQENVLRQVPGVEEMNSNISQGFGGITLTFEVGTNMQEAMINVINALNQTPPRPL
DANEPFINVGGGNNGVPNMASILIRTTADNPITDFSHYQKMIDDVVEPRLRQIAGVGGVQ
LQSRQAKELHIEFDPFRAAALGITLDELRATVSRAADISGGTADVGRRQYTVRFVGQYKP
ENLGNLIVTYNEGRPVHLSELAEVKIAAAEQQGFTKRNGFPAYYITVEGTFDANTVAVLD
GINVAIEELNREVLNKQGLVMELSFDASVHIKRAILLVQGNLGVGAALALLILFAFLRSW
RATLMIASTIPVALLIAFMALEVMGRTLNVISLAGLAFAVGLVLDAAIIVQENIIRLHRS
GEPLLSALLKGTAEVKGALLASTATTVAIFLPVLFMPGVEGQLFSDLALTLSVAVVSSFF
SAVTLIPVFNLLWLKLPEKDSGERFRHWLTAKVRALTGSRKLALFWCVTLIFGASALTLA
LMPRADFLPQARSDGIFTFFSLPPGASLETMEKELGETIIARLKPYYDKQQQPYIKGYNF
SVYGAFNVLFIYPEDPTRADEMIQVLKDKILIDLPDTQAYPSRGSLLQFGFNGGRAINVD
FHGPDMEALMEAAGQGMEIINQALPGAVVRPLPGLTMAQPELQLIPDERRLAQAGADRIQ
IANAVRAYTSGLFVGEYFDGNERMDVLLKGPKWTVPEQLAATPVYTRTAGIQTIGELTQL
HRTVGPTQLQRVNGKRTVSLLIFPPADMSLDEAMEVVQTQAMEKIRATLPADSSLGFRDS
ADRLDKTIRDMGTNFLLAVLILFLLMAALFKSAKDSLLVLLSMPMAICGGVISLRLLNLF
SFQSLDLLTMIGFIILLGLVVNNAILMVDQTRQGSRDGLALDEAIYQAVATRAQPVYMST
LTSIFGMLPLMLVPGVGSEIYRGLAAVIVGGMTASALFTLLLMPSLLRLTSSVSQTASSS
NSTRIAEVTP
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggatctcaccacccaaagtacccgcaatccggccgccaccctggtggcgctgctgctc
atccttatttttggggtactggcggtggccaagctgcccatacagctattgccggacata
catcaaccgcagatctccgtgttcaacggttggcgcgccgccgcgccccaggagatggaa
tccaatatcattgagccccaggaaaatgtgctgcgccaggtgccgggggtggaggagatg
aactccaacatttcccagggattcggcggtatcaccctgacctttgaggtgggcaccaat
atgcaggaggcgatgatcaatgtgatcaacgccctcaaccagacgccccccagaccgctg
gacgccaacgaaccctttatcaatgttggcggcggcaataacggcgtgcccaacatggcg
tcgatcctcattcgcaccacggcagacaacccgatcaccgatttcagccactaccagaaa
atgatcgacgacgtggtggaaccccgcctgcggcagattgccggggtgggcggtgtgcag
ctgcaaagccgccaagccaaggaactgcacatagagttcgatcccttccgtgccgccgcc
ctgggtatcaccctggatgagctgcgggccacagtatcccgcgccgccgatatttccggt
ggcacggccgatgtgggccggcgccagtacactgtgcgttttgtcggtcagtacaagccg
gaaaacctgggtaacctgatagtcacctataacgaaggtcgccccgtgcacctgagcgaa
ctggcggaagtgaaaattgccgccgcagagcagcagggctttaccaagcgcaacggtttc
ccggcctactacatcacggtggaaggcacctttgatgccaataccgtggccgtgctcgac
ggtatcaatgtcgccatcgaggagctgaaccgtgaggtattgaacaaacaagggctggtg
atggagctgtccttcgatgcctcggtccacatcaaacgcgccatcctgctggtgcagggc
aacctgggggtcggcgcggcgctggcgctgctaatcctgttcgctttcctgcgcagctgg
cgggccaccctgatgatagcctccaccattccggtggccctgctgatcgcctttatggcc
ctggaagtcatgggtcgcaccctcaatgtgatctccctggcggggctggcctttgccgtg
ggtctggtgctggatgccgccatcatagtacaggaaaacattattcggctgcaccgcagc
ggggagccgctgctgagcgccttgctcaagggtacggccgaggtcaagggtgccttgctg
gcgtccaccgccaccacagtcgccatcttcctgccggtactctttatgcccggcgtcgaa
ggccaactgttttccgatctggcactgaccctgtcggtggcagtggtttcttctttcttc
agcgccgtcaccctgatccccgtgttcaacctgctgtggcttaagctgccggaaaaggat
agcggagaacgcttcaggcactggctgacagccaaggtcagggccctgaccggctcccgg
aaactggcgctgttctggtgtgttactttgattttcggtgcatcagccctgaccctggcc
ctgatgcccagggccgacttcctgccccaggcccgttcggacggcatattcaccttcttc
tccttacctccgggtgccagcctggaaaccatggaaaaggaactgggcgaaaccatcata
gccaggctcaagccttactatgacaagcagcaacaaccctatatcaagggttataacttc
tctgtttacggcgccttcaatgtgctgtttatctatcccgaggatcccacccgggccgat
gagatgatccaggtgctcaaggacaagatactgatcgacctgcccgacacccaggcctac
cccagccgcggatccctgctgcaattcggtttcaacggcggccgggccatcaacgtcgat
ttccacggtcccgatatggaggccctgatggaagccgctggccagggcatggagataatc
aaccaggcactgcccggtgccgtggtgcgccccctgcccggcctgaccatggcccagccc
gagttgcagctcattccggacgagcgccgtctggcccaggccggtgccgaccgcatccag
atagccaatgcggtgcgggcctatacttccggcctgttcgtcggtgagtacttcgacggc
aacgaacgcatggacgtgctgctcaagggccccaagtggacagtgcccgagcaattggcg
gcaacgcctgtctatacccgcaccgccgggatccagaccataggcgagctgacccaattg
caccgcaccgtggggccgacccagctgcagcgggtcaatggcaagcgcacagtgtcactg
ctgatcttcccgccggcggacatgtccctggatgaggccatggaagtggtacagacccag
gccatggagaagatccgcgccaccttgcccgccgatagctcattgggcttccgcgacagc
gccgaccgcctggacaagacgatacgtgacatgggcaccaacttcctgctggccgtgttg
atcctgttcctgctgatggcggccctgttcaagtccgccaaggacagcctgctggtactg
ctgtccatgcccatggccatttgcggcggtgttatcagcctgcggttgctgaacctgttc
agttttcaaagccttgacctgctgaccatgataggtttcatcatcctgctgggcctggtg
gtcaacaacgccatactgatggtggaccaaacccgccagggcagccgtgacggcttggcg
ctggacgaagccatctatcaggccgtggcgacccgggcccaacccgtgtacatgagcaca
ctcaccagtatcttcggcatgttgccactgatgctggtgcccggtgttggcagcgagatc
taccgcggcctggccgccgtgatcgtgggcggcatgaccgccagcgccctgtttaccctg
ttgctgatgccaagcctgctgcgcctgaccagttcggtatcccaaacagcgtcttcttcc
aattcaacccgcattgccgaggtaacaccatga
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