Shewanella cyperi: JYB88_03955
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Entry
JYB88_03955 CDS
T07829
Symbol
rpoE
Name
(GenBank) RNA polymerase sigma factor RpoE
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
scyp
Shewanella cyperi
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyp03021
]
JYB88_03955 (rpoE)
Transcription machinery [BR:
scyp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JYB88_03955 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_23
Phage_antitermQ
HTH_20
HTH_16
HTH_28
Motif
Other DBs
NCBI-ProteinID:
QSX30818
UniProt:
A0A974XP53
LinkDB
All DBs
Position
940308..940886
Genome browser
AA seq
192 aa
AA seq
DB search
MSGQQSDQQLVELVQQGNKNAFNLLVQKYQGKVINLISRYVRNQADVADVAQEAFIKAYR
ALPNFRGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDADEAEYYDGSDALKEFASPE
RLMLSDEIKRVVFETLESLPEELRMAISLRELDGMSYEDIANIMDCPVGTVRSRIFRARE
AIDKKLQPLLEN
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgagtggacaacaaagcgatcaacagctggtagagctggtgcagcagggcaataaaaat
gcctttaacctgctggtgcaaaaatatcagggaaaggtcatcaacctgatttccaggtat
gtacggaatcaggctgacgtggccgatgtggctcaggaagcctttatcaaggcgtatcgc
gccttgcccaatttccgtggtgagagtgcgttttatacctggctctaccgcattgcggtt
aataccgccaaaaattacctggtatcccagggacgcagggcgccggccaacgatgtggat
gccgatgaggccgagtattacgacggcagtgatgcgctcaaggaatttgcttcaccggaa
cggctgatgctctccgatgaaattaagcgggtggtgtttgagaccctggagtcattaccc
gaagagctgagaatggcaatttcgttgcgggaactcgatggcatgagctatgaagatata
gccaacatcatggattgcccggttggaactgtcaggtcgcggattttccgtgcccgggaa
gcgatagacaaaaagctccagccgttattggagaactga
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