Shewanella cyperi: JYB88_10000
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Entry
JYB88_10000 CDS
T07829
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03030
DNA replication
scyp03430
Mismatch repair
scyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYB88_10000 (holB)
03430 Mismatch repair
JYB88_10000 (holB)
03440 Homologous recombination
JYB88_10000 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyp03032
]
JYB88_10000 (holB)
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_10000 (holB)
Enzymes [BR:
scyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JYB88_10000 (holB)
DNA replication proteins [BR:
scyp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JYB88_10000 (holB)
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JYB88_10000 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
Motif
Other DBs
NCBI-ProteinID:
QSX28623
UniProt:
A0A975AJX9
LinkDB
All DBs
Position
complement(2308501..2309418)
Genome browser
AA seq
305 aa
AA seq
DB search
MIQMPWLSAPLGSFMQLLMTGRLPHAILVGMDRGLGAEHLLGDIARAALCLAPTAKGACG
YCKGCQLIAAGNHPDLYQVQADGHQIKIDQIRNLCQDLTSTSQQGGRRVAIIYEAERMNI
AAANALLKTLEEPGRDTLLLLQSNQSARLLPTLVSRCQRLPCQEPSPEVVSDWLRGLSPE
GEDVSWCLPVCGGPVKLAELLQGDGYKQLSQLRKDWRQSLSSGHLYASLISISEEQITDA
LKVLYIELKSDLERGWPQDAFQRNNIARLAAEIMHVCQGLTAMPNVNCQALCQKVVLDYQ
RIVSS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgatacagatgccctggctcagtgctccccttggcagcttcatgcaattgctgatgacc
ggccgtttgccccacgccattctggtggggatggacaggggattgggcgctgaacacttg
ctaggcgatattgccagggcggcgttgtgcctggcgccgaccgcaaaaggggcctgtggt
tattgtaagggctgtcaattgattgcggcgggcaaccatccggatctgtaccaggtgcag
gccgatggtcaccaaatcaagatcgaccaaatccggaacctgtgtcaggatctgaccagt
acctctcagcaggggggcagacgggtcgccattatctacgaggcagagcgcatgaacatc
gccgctgccaacgcgctgctgaaaaccctggaagaaccggggcgagacaccttgttgctg
ctccaaagtaaccagtcagcacgcttactgccgactttggtcagccgctgtcagcgcttg
ccatgtcaggaaccttcgcccgaagttgtctctgactggttgcggggcttgagtccggaa
ggggaagatgtcagctggtgtctgccggtatgtggcggcccggtaaaactggctgagtta
ttgcagggtgatggctacaaacaactgtcacaactgagaaaagattggcgccaaagtttg
tcgagcggacatctctatgctagtttgatatctataagtgaagaacaaattactgatgca
cttaaagttttatatatcgaactgaaatccgatctagaacggggctggcctcaggatgcg
tttcagcgtaataatatcgcccggcttgccgccgaaattatgcatgtttgtcagggatta
actgcaatgccgaatgtgaattgtcaggcattgtgtcaaaaagtcgttttggattatcag
cgaattgtaagcagctaa
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