Shewanella cyperi: JYB88_11205
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Entry
JYB88_11205 CDS
T07829
Symbol
fadJ
Name
(GenBank) fatty acid oxidation complex subunit alpha FadJ
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
scyp
Shewanella cyperi
Pathway
scyp00071
Fatty acid degradation
scyp00280
Valine, leucine and isoleucine degradation
scyp00310
Lysine degradation
scyp00362
Benzoate degradation
scyp00380
Tryptophan metabolism
scyp00410
beta-Alanine metabolism
scyp00640
Propanoate metabolism
scyp00650
Butanoate metabolism
scyp00907
Pinene, camphor and geraniol degradation
scyp00930
Caprolactam degradation
scyp01100
Metabolic pathways
scyp01110
Biosynthesis of secondary metabolites
scyp01120
Microbial metabolism in diverse environments
scyp01200
Carbon metabolism
scyp01212
Fatty acid metabolism
Module
scyp_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
JYB88_11205 (fadJ)
00650 Butanoate metabolism
JYB88_11205 (fadJ)
09103 Lipid metabolism
00071 Fatty acid degradation
JYB88_11205 (fadJ)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
JYB88_11205 (fadJ)
00310 Lysine degradation
JYB88_11205 (fadJ)
00380 Tryptophan metabolism
JYB88_11205 (fadJ)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
JYB88_11205 (fadJ)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
JYB88_11205 (fadJ)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
JYB88_11205 (fadJ)
00930 Caprolactam degradation
JYB88_11205 (fadJ)
Enzymes [BR:
scyp01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
JYB88_11205 (fadJ)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
JYB88_11205 (fadJ)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
JYB88_11205 (fadJ)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
LSDAT_euk
Motif
Other DBs
NCBI-ProteinID:
QSX28838
UniProt:
A0A974XKB8
LinkDB
All DBs
Position
complement(2596988..2599108)
Genome browser
AA seq
706 aa
AA seq
DB search
MDKTFNLSRREDGIALLTMDVPGETMNTLKAQFAPEITAILQEIKSDTCIKGLVLISGKA
DSFVAGADISMLDACQSAEDARLLSRQGHHVFAELEGLNIPVVAAIHGACLGGGLELAMA
CHSRVCSDSAKTMLGVPEVQLGLLPGGGGTQRLPRLVGIAKALDLMLTGKQVRPKQALKM
GLVDDVVPQSILLESAIELAKAGKKARKPVKQSLVTRLLEGTPVGRNIMFDQAGKQVMKK
TQGNYPAPMKIIDCVRQGMAKGLEKGLEVEASHFGELVATAESAALRSIFFATTEMKKET
GAGDATARPLNKAVILGGGLMGGGIASVTTTKAKIPVRVKDINEKGLSNALGYAYKLLDK
GVKRRYMSAAERDKLMALMTTTTEYKGVKDADIVVEAVFEDLKLKHQMVQDIERECSEHT
IFASNTSSLPITQIAEVASRPENVIGLHYFSPVEKMPLVEVIAHEKTSPETIATTVAFAR
KQGKTPIVVKDGAGFYVNRILALYMNEAAQLLLEGQSVDHLDKALVKFGFPVGPMTLLDE
VGIDVGAKISPILEKELGERFKAPAAFDKLLADDRKGRKNGKGFYVYGKASKKGKQVDES
VYAVLGLKPATAREPKEIAQRCVVQMLNEAVRCLEAGIIASPRDGDIGAIFGIGFPPFLG
GPFRYMDTLGAGQLVSILEGYQAKYGDRFAPAPLLKTMAAENKRFY
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggataagacttttaacctgagccgccgcgaagacggtattgccctgctgaccatggat
gtgccgggcgagaccatgaataccctcaaggcccagtttgcccccgagatcaccgccatt
ttgcaggagatcaagagtgatacctgcatcaagggcctggtgctgatctccggcaaagcg
gattctttcgtcgccggtgccgatatttccatgttggatgcctgccaaagcgccgaagat
gcgcgcctgctgtcgcgtcagggccaccatgtgtttgccgagctggaagggctgaatatc
cccgtggtagccgccattcacggtgcttgcctggggggcggtctggaactggccatggcc
tgtcatagtcgcgtttgcagtgacagcgccaaaaccatgctgggtgtgcccgaagtgcag
ttgggactcttgcccggcggcggtggtacccagaggctgcctcggctggtgggcattgcc
aaggcactggatctgatgttgaccggcaaacaggttcgtcccaaacaggcactgaaaatg
gggctggtggatgatgtggttccccagagcattttacttgagagcgccattgaattggcc
aaagcaggtaaaaaggcgcgcaaacctgtgaagcagtctttggtgaccaggttgctggaa
ggcacacccgtggggcgcaacatcatgtttgatcaagccggcaaacaggtgatgaagaag
acccagggcaattatcccgccccgatgaaaatcattgactgtgttcgccagggtatggcc
aagggcttggagaaagggttggaagttgaagccagccattttggtgagctggtggcaaca
gcggaatctgcggccctgcgttccatcttttttgccaccacggaaatgaagaaggaaacc
ggtgccggcgatgcaaccgcaagaccgctgaacaaggcagtgatcctcggcggtggcctg
atgggcggcggcattgcttctgtgaccaccaccaaggccaagatcccggtcagggttaaa
gacatcaacgagaaaggtctgtccaatgcgttgggatatgcctataagttgctcgacaag
ggcgtgaaacgcagatatatgtcggcggccgaacgggacaagctgatggccttgatgacc
actaccaccgagtacaagggcgtcaaggatgccgacatagtggttgaggcggtatttgag
gatctcaaactcaaacaccagatggtgcaggatattgagcgcgagtgcagcgagcacacc
atattcgcatcaaatacctcgtctttgcctattactcagatagcggaagttgccagtcga
ccggaaaacgtgattggcctgcattatttctctccggtagaaaaaatgccgctggtggaa
gtgattgcccatgagaaaacgtcgcctgagaccatagccaccacagtggcctttgcccgc
aagcagggtaagacccctattgtggtgaaggacggtgccggtttctacgtaaaccgtatt
cttgccctctatatgaatgaagccgcgcagttgctgctggaaggtcaaagtgttgaccat
ttggacaaggcgctggtgaagttcggcttccctgtgggaccaatgactttgctcgatgaa
gtgggcatagatgtcggggccaagatttcccctatcttggaaaaggagttgggtgagcgt
ttcaaggcgcctgccgcctttgacaagttgcttgccgatgaccgcaaagggcgcaagaac
ggcaagggattctatgtgtatggcaaagccagcaaaaaaggtaagcaggtggatgaaagc
gtctatgctgtgctgggactgaaaccggcaaccgccagagagcccaaagaaattgcccag
cgctgtgtggtgcagatgctcaacgaagccgtgcgctgtttggaggccgggatcattgct
tccccccgtgacggcgatataggagccatatttggtatcggcttcccgccgttcctgggg
gggccgttccgctatatggatactttgggggccggccaattggtatcaatccttgaaggg
taccaagccaagtatggtgacaggtttgcgccagcgcccttgctcaagaccatggcagcg
gaaaacaaacgtttttattga
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