Shewanella cyperi: JYB88_17965
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Entry
JYB88_17965 CDS
T07829
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
scyp
Shewanella cyperi
Pathway
scyp01501
beta-Lactam resistance
scyp01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JYB88_17965
01503 Cationic antimicrobial peptide (CAMP) resistance
JYB88_17965
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scyp02000
]
JYB88_17965
01504 Antimicrobial resistance genes [BR:
scyp01504
]
JYB88_17965
Transporters [BR:
scyp02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JYB88_17965
Antimicrobial resistance genes [BR:
scyp01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JYB88_17965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF
Motif
Other DBs
NCBI-ProteinID:
QSX30035
UniProt:
A0A974XKC2
LinkDB
All DBs
Position
4048368..4051529
Genome browser
AA seq
1053 aa
AA seq
DB search
MARFFIDRPIFAWVIAIIVMLAGVLAIRDLPVSQYPKIAPPTVVISAFYPGASAKTLEDS
VTQVIEQRMTGLDHLRYINSTSDGFGNAAITLTFNADADPDIAQVQVQNKLQSAMPLLPQ
EVQNQGVRVNKASSGFLMVLGFVSEDGSMDRSDIADYVGSNIQDPMSRVPGVGELTLFGS
PYAMRIWLDPLKLTQYSLTSQDVINSIREQNAQVSAGQLGGAPSLPGQQLNATVSAQSRL
TTEEEFRKIILKSDTSGAKVYLGDVARVELGAESYVVQSFYNGRPAAGLAIKLATGANAL
ETADSVRAKIDEMSPFFPQGLKVVYPYDTTPFVDKSIEGVIHTLLEAIVLVFLIMYLFLQ
NFRATLIPTIAVPVVLLGTFAILSAMGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM
QEEGLGAVEATRKSMDQITGALVGIGLTLSAVFVPMAFMTGSTGVIYRQFSITIVSAMAL
SVMVALILTPALCATFLKPIKPGHVHEKTGFFGAFNRSFDNLTQRYCGSVSGILKRSLRF
AAIYLMLVVATGWLFSRMPTAFLPDEDQGILFSQVILPTNATQESTVKVLDKVSDHFLQG
EKDNVNSVFTVAGFSFAGMGQNMGVAFVSLKDWSQRTGPGQDVESISGRAMGVLWQIKEA
FAFAFAPPAVIELGTANGFDLFLQDKNGMGHEQLVAARNQLLGLAAQNPNLVGVRPNGQE
DAPMYQLHIDHSKLRALGVDINNVNNVLATAWGGSYVNDFIDRGRVKKVYVQGDAHYRMQ
PEDINSWYVRNNQGEMVPFSAFASGSWEFGSPRLERFNGLPAMNIQGSTAPGYSTGDAMR
DFEEMVKQLPPGFGIEWNGLSYEERLSGNQAPGLYALSILVVFLVLAALYESWSVPFAVV
LVVPLGIIGALVAMTGRGLDNDVFFQVGLLTTVGLATKNAILIVEFAKEYYEHGAGLVEA
TLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGAQNAIGTGVLGGMMSSTFLGIFFIP
LFFVLVERLFNRSERKTQEAGPGPGPELEPEAD
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtttctttatcgatcgccccatctttgcctgggtgatcgccatcatagtgatg
ctggcgggggtattggccattcgtgacctgcccgtgtcccagtatcccaagatagcgccg
ccgaccgtggtgatcagcgccttctaccccggtgcctcggccaagaccctggaagattcg
gttacccaggtgattgaacagcggatgacgggcctcgaccatctgcgctacatcaactcc
accagcgacggctttggcaatgcagccatcaccctgaccttcaacgccgatgccgatccc
gacatagcccaggtgcaggtgcagaacaagctgcaatcggccatgccgctgctgccccag
gaagtacagaatcagggtgtccgggttaacaaggcatcctcgggcttcctgatggtgctg
ggtttcgtttccgaagacggttccatggacaggagcgatatcgccgattacgtcggctcc
aatatccaggaccccatgagccgggtgccgggcgtgggtgagctgaccctgttcggctcg
ccctatgccatgcgcatttggctcgacccgctcaagctgacccaatacagcctgacctcc
caggacgtgatcaattccatccgcgagcagaatgcccaggtgtccgcgggccagctgggg
ggcgcaccgtccttgcccggtcagcagctcaacgccactgtctcggcccagagccgcctg
accacggaggaggaattccgcaagatcatcctcaagtccgacacctcgggtgccaaggtg
tatctgggtgatgtggcccgggtggagctcggcgccgagagctatgtggtgcagtccttc
tataacggccgtccggccgcgggtttggcaatcaagctggccaccggcgccaatgccctg
gaaaccgccgattcggtgcgggccaagatagatgagatgagccccttctttccccagggg
ttgaaggtggtctatccctatgacaccacgccctttgtcgacaagtccatcgagggcgtg
atccataccctgctggaagccatagtgctggtgttcctcatcatgtacctgttcctgcag
aacttccgcgccaccctgatccccaccatagccgtgcccgtggtcttgctgggcaccttc
gccatactctcggccatgggattttccatcaacaccctgaccatgttcgccatggtgctg
gctataggcctgttggtggacgacgccattgtggtggtggaaaacgttgagcgggtgatg
caggaggaaggcctgggggcggttgaagccacccgcaagtccatggatcagatcaccggc
gccctggtgggcataggcctgaccctgtcggcggtattcgtacccatggcctttatgacg
ggatccaccggggtgatctaccgccagttctccatcaccatagtctcggccatggccctg
tcggtgatggtggcgctgatcctgacgccggccctgtgcgccactttcctcaaacccatc
aagccgggacatgtgcacgaaaagaccggcttcttcggtgccttcaaccgcagctttgac
aatctcacccaacgctattgcggcagtgtgtccgggatactcaagcgcagcctgcgcttt
gcagccatctacctgatgctggtggtggccacgggttggctgttcagccgcatgcccacc
gccttcctgcccgatgaagaccagggcattttgttttcccaggtgattctgcccaccaat
gccacccaggagtccacggtcaaggtactggacaaggtgtcggatcacttccttcagggc
gagaaagacaatgtcaattcggtgttcaccgtggccggtttcagctttgccggtatgggt
cagaacatgggtgtggccttcgtcagcctcaaggactggagtcagcgcaccgggccgggc
caggatgtggaatccatctccggccgcgccatgggtgtgctgtggcagattaaagaagcc
ttcgccttcgccttcgcgccgccggcggtgatcgaactgggtacagccaacggcttcgat
ctgttcctgcaggataaaaacggcatgggccatgagcaattggtggcggcccgtaaccag
ctgctgggactggcggcccaaaatcccaatctggtgggggtgcgccccaacggccaggaa
gatgcccccatgtaccagctgcacatagatcacagtaagctgcgggccctgggcgtggat
atcaataacgtcaataacgtgctggccaccgcctggggtggcagctatgtgaacgacttt
atcgaccgcggccgggtgaagaaggtctacgttcagggtgatgcccattaccggatgcag
cccgaggacatcaacagctggtacgtacgcaacaaccagggcgagatggtgcccttctcg
gcctttgccagcggcagctgggaattcggctcccccagactggagcgtttcaacggtctg
ccggcgatgaacattcagggcagcacggcccccggttacagcacaggtgacgccatgcgc
gacttcgaggaaatggtcaagcagctgccaccgggattcggcatcgaatggaacggcctg
tcctatgaggagaggctgtcgggcaaccaggcccccggcctctatgccctgtcgattctg
gtggtgttcctggtgctcgcggccctgtatgaaagctggtccgtgcccttcgccgtggtg
ctggtggtgccccttgggatcataggtgccttggtggccatgacgggaaggggcttggac
aatgacgtgttcttccaggtgggcctgctgacgaccgtggggctggccaccaagaacgcc
attctgatcgttgagttcgccaaggaatactacgagcatggcgccggactggtggaggcc
accctgcacgcggtgcgggtgcggctgcggcccatcctgatgacctcgctggcctttggc
ctcggcgtagtgcctctggccatctccagcggcgtgggctcaggcgcccagaacgccata
ggcacgggggtgctcggcggcatgatgagttccaccttccttggcatcttctttatcccg
ctgttcttcgtgttggtggaacggctgttcaaccgcagcgagcgcaagacacaggaagcc
gggcccggcccaggtccggaattggaaccggaagcagactga
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