Streptomyces dangxiongensis: D9753_20905
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Entry
D9753_20905 CDS
T08044
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdd
Streptomyces dangxiongensis
Pathway
sdd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D9753_20905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdd03400
]
D9753_20905 (mfd)
Enzymes [BR:
sdd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D9753_20905 (mfd)
DNA repair and recombination proteins [BR:
sdd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D9753_20905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AYN40929
UniProt:
A0A3G2JK30
LinkDB
All DBs
Position
4644216..4647746
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AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAIGAAADGNRKHVDLVGPPAARPFALAALARETGRPVLAVTA
TGREAEDLAAALRSLLPPDGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSTDDP
GAGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGRTADLNQTVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRTRARALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPEGAMAV
VCDPERVRTRAADLVATSQEFLLASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADLEPDADTLKLGMHAPETYRGDTARALADTKGWLADGWRTVFITEGHGPAA
RTVEVLGGEGIAARLDSDLGTLSPSVVHVSCGSVEYGFVDPALKLAVLTETDLSGQRTAS
RDGARMPARRRKTIDPLSLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGTDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLVCGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVRALSRFQTDTEAKA
VLEALKDGTVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFY
IHNRVESIDRAAAKLREIVPEARIAIAHGQMSEAALEQVVVDFWEKRFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGG
AEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELTDRYGKL
PEPVENLLLVAALRMLARASGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPTA
HQILVPRPKTAKVGGKPVVGRELLGWVGEFLTSVLN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgatc
ggcgcggcagcggacggcaaccgcaagcacgtcgacctcgtcggccccccggcggcccgc
cccttcgccctcgccgccctggcccgcgagaccggccggccggtgctggccgtgacggcg
accggccgcgaggccgaggacctcgccgcggccctgcgctcgctgctgcctcccgacggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccccgcagcgac
accgtgggccgccgcctcgccgtcctgcggcgcctcgcccaccccagcaccgacgacccc
ggggccggccccgtctccgtcgtcgtcgcacccgtacgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagccggtgtccctgaggaccggccggaccgccgacctgaac
cagaccgtcgaagccctcgcggccgccgcctacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcgtcgagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
caacgctccctcgaagtcgccgagcacggcctgtgggcgcccccgtgccgcgagctgctc
ctcaccgacgaggtccgcacgcgggcgcgcgccctcgccgaggaacaccccgagctgggc
gaactgctcggcaagatcgccgagggcatcgcggtggagggcatggagtccctggccccg
gtcctggtggacgagatggaactgctcctcgacgtgctgcccgagggcgccatggccgtc
gtctgcgaccccgagcgggtccgcacccgcgccgccgacctcgtggcgacctcccaggag
ttcctcctggcctcctgggcggccaccgcgggcggcggcgaggccccgatcgacgtcggc
gccgcctccctgtggtccatcgccgacgtacgcgaccgcgcgcgcgagctggacatgatg
tggtggtcggtgtccccgttcgcggccgacctggaaccggacgccgacaccctcaagctc
ggcatgcacgcccccgagacctaccgcggcgacacggcgcgggccctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtgttcatcaccgagggccacggcccggccgcc
cgcaccgtcgaggtgctcggcggcgagggcatcgccgcccgcctggactccgacctcggc
acgctcagcccctccgtcgtgcacgtctcctgcggctcggtcgagtacggcttcgtcgat
ccggcgctcaagctcgccgtgctcaccgagaccgacctgtccggccagcgcaccgcgagc
cgcgacggcgcccgcatgccggcccgccgccgcaagaccatcgacccgctcagcctggaa
ccgggcgactacatcgtccacgaacagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtcgagtacgcgcccgccaaacgc
ggccagcccggcgaccggctgtacatcccgaccgaccagttggaacagatcaccaagtac
gtcggcggcgaggcgcccaccctgcaccgactgggcggcgccgactggacgaagaccaag
gcgcgcgcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctgtacagcgcg
cgcatggccgcccccggccacgccttcggcaccgacaccccgtggcagcgcgagctggag
gacgccttcccctacgccgagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccgcctggtctgcggcgacgtcggctacggcaag
accgagatcgccgtacgggccgccttcaaggccgtacaggacggcaagcaggtcgccgtc
ctggtgcccacgaccctgctggtgcagcagcacttcggcacgttctccgagcggtacggg
cagttcccggtcaacgtgcgggcgctctcccgcttccagaccgacaccgaggccaaggcc
gtcctggaagccctgaaggacggcaccgtggacgtcgtcatcggcacccaccgcctgttc
tcctccgagaccaagttcaaggacctcggcctcgtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctcaagaagctccgcgccaacgtcgacgtgctgaccatg
tccgccacgcccatcccccgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccaccccgccggaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagaggcagatcggcgccgccatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgcgcggcggcgaagctgcgggagatcgtcccc
gaggcccgcatcgccatcgcccacggccagatgtccgaggcggccctggagcaggtcgtc
gtcgacttctgggagaagcggttcgacgtcctcgtctccaccacgatcgtcgaatccggc
atcgacatctccaacgccaacaccctgatcgtggaacgcggcgacaccttcggcctgtcc
cagttgcaccaactgcgcggccgggtcggccggggccgcgatcgcggctacgcctacttc
ctgtacccgccggagaagccgctgacggagaccgcccacgagcggctcgcgacgatcgcc
cagcacacggagatgggcgccggcatgtacgtcgcgatgaaggatctggagatccgcggc
gccggcaacctgctcggcggcgaacagtccgggcacatcgcgggcgtcggcttcgatctg
tacgtccgcatggtcggcgaggccgtcgccgactaccggcggcagttggagaccggcggg
gccgaggaggagccgccgctcgaggtcaagatcgaactgcccgtcgacgcccacgtcccg
cacgactacgcccccggcgagcggctgcgcctccaggcgtaccgggccatcgcctccgcc
aacagcgaggaggacatcaaggccgtccgcgaggaactcaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggccgccctgcgcatgctcgcgcgcgcgagc
ggcgtcggcgagatcgtcctccagggcaccaacatccgcttcgcgccggtggagctgcgc
gaatcgcaggaactgcggctcaagcggctctaccccggcacggtcatcaagcccaccgcc
caccagatcctggtcccgcgccccaagaccgccaaggtgggcggcaagccggtggtcggc
cgcgaactgctgggctgggtaggtgagttcctcacctcggtcctcaactga
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