Stutzerimonas degradans: GOM96_01210
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Entry
GOM96_01210 CDS
T08431
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GOM96_01210 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_01210 (ligD)
Enzymes [BR:
sdeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GOM96_01210 (ligD)
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GOM96_01210 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGW19664
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All DBs
Position
263022..265586
Genome browser
AA seq
854 aa
AA seq
DB search
MALDEYQRKRDFAATPEPAGTRKRARRSEQALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPAVRRLAVHVEDHPLDYASFEGHIPEGHYGAGDVIVWDRGVWLPDGDPQVGY
RKGKLKFTLQGEKLAGSWNLVRTRMEGKQEQWFLIKSRDEAAREQADYDVTAAQPDSVLS
ERTLVPRRRGTARKRTEEDPPKPVKRPGRTRKGAATKAPPQALPGAVAADLPATLTPQLA
TLVDAVPSGDWRYEIKFDGYRILARIDAGRVQLFTRNGHDWTAKMPQQAAALAGLGLQSG
WLDGEVVVPDESGTPDFQALQNAFEAGRSGGILYYLFDAPYLNGLDLREVPLEQRRAALR
EVLARSDSDLLRFSEDFTEAPQSILESACQMKLEGLIGKRAGSSYVGKRSSSWVKIKCGN
RQEFIIVGYTAPKGTRTGFGALLLGLHGDDGQLRYAGKVGTGFDLATLTSLHRRLQALEI
ARCPLDKAPPATDVRGAQWLEPKLMCEVAYAEMTRQGVVRHAVFHGLRTDKPAQAITRER
ARPVSAARSRGGRRKADDPLAGTGVRISNPERVIDPHSGTTKLELARFYARLAPWLLPQL
RERPLALVRAPEGITGELFFQKHADKLSIPHITQLDPALDKHGALLVIDSRDALVGAAQM
GTIELHAWNAVAPGLEHPDRFVLDLDPDPALPWKRMVEATQLTQTLLDEIGLQSFLKTSG
GKGLHIVVPLAPVHDWSEVKTFSHAIARYLAKLLPGHFSAVSGPKNRVGRIFIDYLRNSR
GASTVSVYSVRARPGLPVSVPIHRDELSELQGANLWTVGNLFERLQELGEADPWAELPQV
RQRIDDDMRARLGG
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgacgagtaccagcgcaagcgtgatttcgccgccacgcccgagccggctggc
acgcgtaagcgcgcccggcgcagcgagcaggcgctgcagtactgcatccagaaacatgac
gccacgcgattgcattacgacttccgcctggaactcgacggcacgctgaagagctgggcg
attcccaaggggccgagcctggacccggcggtgcgccggctggcggtccatgtcgaggat
catccgctggactatgccagcttcgaggggcatatccccgaagggcactacggcgccggc
gacgtgatcgtctgggatcgcggcgtctggctaccggacggtgatccgcaggtcggttat
cgcaagggcaagctgaaattcaccttgcagggcgagaagctcgccggcagctggaatttg
gtgcgtacccgcatggagggcaagcaggagcagtggttcctgatcaaatcccgcgatgag
gccgcgcgcgagcaagccgattacgacgtcaccgccgcccagccggacagcgtgctcagc
gagcgcaccctggtgccgcgccgccgcgggacggcgcgcaaacgcaccgaggaagatccg
cccaagccggtgaagcgcccaggtcgcacgcgaaagggcgcggcgaccaaggcgccgccg
caagcgctaccgggcgccgttgccgccgacctgccggccacgctgacaccgcagttggcc
acgctggtggatgcggtgccgagcggtgactggcgctacgagatcaagttcgacggctac
cgcatccttgcgcgcattgatgcggggcgggtgcagctgttcacccgcaatggccatgac
tggacggcgaagatgccgcagcaggctgccgcgcttgccgggctcggactgcaatcgggt
tggctcgatggcgaggtggtggtgccggacgagagcggcacgccggatttccaggcgctg
cagaatgccttcgaggccggccgcagcggcggcatcctctattacctgttcgatgcgccg
tacctgaacgggctggacctgcgcgaggtgccgctggagcagcgtcgcgcggcgttgcgt
gaagttttggcgcgtagcgatagcgatctgctgcgtttttccgaggatttcaccgaggcg
ccgcagagcattctcgaaagcgcctgccagatgaagctcgaagggctgatcggcaagcgc
gccggcagcagctatgtcggcaagcgcagcagcagctgggtcaagatcaagtgcggcaac
cgacaggaattcatcatcgtcggctacaccgcccccaagggcacgcgcaccggtttcggt
gcgttgctgctggggctgcatggcgatgacgggcagctgcgctacgccggcaaggtcggc
acaggcttcgatctggcgacgctaaccagcctgcatcggcgcttgcaggcgctggaaatc
gcccgctgcccgctggacaaggcgccgccggcgaccgatgtgcgcggcgcgcaatggctc
gaaccgaagctgatgtgcgaagtggcctatgccgagatgacacgccagggcgtggtgcgg
catgcggtgttccatggcctgcgcaccgacaaaccggcacaggcgatcacccgcgagcgc
gcccggccggttagcgcggcgcgcagccggggcggcaggcgcaaggcggacgatccgctc
gccggcaccggcgtgcgcatctccaacccggaacgcgtcatcgacccgcacagcggcact
accaagctcgaactggcgcgcttctacgcccgtctcgcgccgtggctgctgccgcaactg
cgcgagcgcccgctggcgctggtgcgcgcgccggaaggcatcaccggcgagctgttcttc
cagaagcacgcggacaagctgagcatcccgcacatcacccagctcgatccggcgctcgac
aagcacggcgcgctgctggtgatcgacagccgtgacgcgctggtcggtgcggcacagatg
ggcaccatcgagctgcacgcctggaatgccgtcgcccccgggctggagcacccggaccgc
ttcgtgctcgacctcgacccagaccccgccttgccgtggaaacgcatggtcgaggctacc
cagctgacccagacgctgctggacgagatcggcctacagtcgtttctcaagaccagcggc
ggcaagggactgcacatcgtcgtgccgctggcgccggtgcatgactggagtgaagtgaaa
accttcagccatgccatcgcccgctatctcgccaagctgctgccgggccacttttccgcc
gtcagcggaccgaagaaccgcgtcggccgcatcttcatcgactacctgcgcaacagccgc
ggcgccagcacggtgtcggtctattcggttcgcgcacggccgggactgccggtttccgtg
cccatccaccgcgatgagctgagcgaattgcagggcgccaacctgtggacggtcggcaac
ctgttcgagcgtctgcaggagctgggcgaggcagatccctgggctgagctgccgcaggta
cgacaacgcatcgacgacgacatgcgcgcacgccttggcggttga
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