Stutzerimonas degradans: GOM96_05830
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Entry
GOM96_05830 CDS
T08431
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GOM96_05830 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_05830 (uvrB)
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GOM96_05830 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GOM96_05830 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGW20515
LinkDB
All DBs
Position
complement(1262247..1264262)
Genome browser
AA seq
671 aa
AA seq
DB search
MSKFELVTRFKPAGDQPEAIRLMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTM
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQY
TRNDMDFARATFRVRGDVIDVFPAESELEAVRIELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLGAIDKIKDELRERLDYLRGQNKLVEAQRLEQRTRFDLEMIMELG
YCNGIENYSRYLSGREAGEPPPTLFDYLPPNALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ
IEVRPALTQVDDLLSEIRKCVAKEERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAVLDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADNITGSMQRAIDETERRRAKQIAFNEAHGIVPKGVKKDVQDILEGATV
PGSRSRKRRSEAKAAEESARYENELRSPSEITKRIRQLEEKMLLLARDLEFEAAAEARDE
IHKLRERLLQV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagttcgagttggtcacgcgattcaagccggccggcgatcagccggaggccatc
cgcctgatggtcgagggtatcgaggctgggctgtcgcatcagacgctgctgggggtgacc
ggttcgggcaagaccttcagcattgccaatgtcatcgcccaggtgcagcgcccgacgatg
gtgctggcgccgaacaagacgctggcggcccagctgtatggcgaattcaaggcgttcttc
ccgaacaatgcggtggagtacttcgtttcctattacgactactaccagcccgaagcctat
gtgccctcgtcggataccttcatcgagaaagacgcctcgatcaacgaccatatcgagcag
atgcgcctgtcggcgaccaaggcattgctggagcgaccggacgcgatcatcgtcactacc
gtctcctgcatctacggcctcggcgatccgcagtcctacctgaaaatggtgctgcacgtc
gatcgtggcgatcgcctcgaccagcgcgagctgttgcgtcggctgactggcttgcagtac
acgcgcaacgacatggatttcgcccgcgcgaccttccgtgtgcgcggtgacgtgatcgac
gtgtttccggccgaatcggagctcgaggcggtgcgcatcgagctgttcgacgacgaagtg
gagagcctgtcggcgttcgatccgctgaccggcgaggtgatccgcaagctgccgcgcttt
accttctaccccaagagccactatgtgaccccgcgcgagacgctgctcggtgccatcgac
aagatcaaggacgagctgcgtgagcggctcgactacctgcgcggacagaacaagctggtg
gaggcgcagcgcctggagcagcgcacgcgcttcgatctggaaatgatcatggagctgggc
tactgcaacggcatcgaaaactactcgcgctacctctccgggcgcgaggcgggcgagccg
ccaccgacgctgttcgactacctgccgcccaatgcgctgctggtgatcgacgagtcgcac
gtctcggtgccgcaggtcggcgcgatgtacaagggcgaccgttcgcgcaaggaaaccctg
gtggagtacggcttccgcctgccatcggcgctggacaaccgaccgatgcgcttcgacgag
tgggaggcgatctgtccgcagaccatcttcgtttccgccacgcccgggccatacgaggcc
gagcatgcaggccgcgtggtcgagcaggtggtgcggccgaccggtctggtcgatccgcag
atcgaggtgcgcccggcgctgacccaggtcgacgacctgctgtcggaaatccgcaagtgc
gtcgccaaggaagagcgcgtgctcgtcaccacgctgaccaagcgcatggccgaggacctc
accgattacctcggcgaccatgacgtgcgcgtccgctatctgcattcggacatcgatacc
gtggagcgcgtagaaatcatccgcgacctacgcctgggcactttcgatgtgctggtgggt
atcaacctgctgcgcgaggggctggatatgccggaagtctcgctggtggccgtgctcgat
gccgacaaggaaggcttcctgcgctccgagcgttcgctgatccagaccatcggccgcgcc
gcgcgcaacctcaacggtcgcgccattctctacgccgacaacatcaccggctcgatgcag
cgcgccatcgacgaaaccgagcggcgccgggccaagcagatcgccttcaacgaagctcac
ggcatcgtgcccaagggcgtgaagaaggatgtgcaggacattctcgaaggcgccaccgtg
cccggatcgcgcagccgcaaacggcgcagcgaggccaaggccgcggaggaaagcgcgcgc
tacgagaacgagctgcgctcgccgagcgagatcaccaagcgcatccgccagctggaagaa
aagatgctgctgctggcgcgcgatctggaattcgaggctgcggcggaggcccgcgacgag
attcacaagttgcgcgagcgcctgctgcaggtctag
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