Stutzerimonas degradans: GOM96_12055
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Entry
GOM96_12055 CDS
T08431
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03030
DNA replication
sdeg03410
Base excision repair
sdeg03420
Nucleotide excision repair
sdeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GOM96_12055 (ligB)
03410 Base excision repair
GOM96_12055 (ligB)
03420 Nucleotide excision repair
GOM96_12055 (ligB)
03430 Mismatch repair
GOM96_12055 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdeg03032
]
GOM96_12055 (ligB)
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_12055 (ligB)
Enzymes [BR:
sdeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GOM96_12055 (ligB)
DNA replication proteins [BR:
sdeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GOM96_12055 (ligB)
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GOM96_12055 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GOM96_12055 (ligB)
MMR (mismatch excision repair)
DNA ligase
GOM96_12055 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GOM96_12055 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QGW21686
LinkDB
All DBs
Position
complement(2608988..2610655)
Genome browser
AA seq
555 aa
AA seq
DB search
MQRLVASLLALVSPICLAACPPWSAERARSEIGELTQRLAAWDDAYHRRGLAPIDDELYD
QARARLQQWQQCFAAQNAPSPSPLAKAGGPLLHPVAQTGLAKLADVAELRAWMAARDDLW
IQPKVDGVAVTLVYRDGRLRQAISRGDGRSGQDWTARARQLPAIPTQLPRRDEVILQGEL
YWRQDAHVQARAGSDGARGRVAGALQGKTPAADSEARIGLFVWDWPNGPAEMAKRLTGLA
AMGFADSVRFSQPLADPEQARQWRERWYRQPLPFASDGVVLRQGRRPPAERWQASPPHWA
VAWKYPPRSALAQVRRVEFRIGRRGRITPLLQLEPVQLDDRRIARVSLGSLKRWQALDVR
PGDQVAIRLAGLTIPQLDSVVWRSPQRAAVQPPNPARYHALSCWQATPGCEQQFLARLAW
LSGRHGLAIPGVGPGTWRELLDAGLLRDLLAWLELDAARLQHVPGFGATRATTLARNLAA
TRQRPFAHWLAALGLPADAALASDDDWQRLAARSEADWRAAGSGAVRARQLWQFFRADAP
QALRARLHQAGVRGF
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgcctcgtcgcgtcactcctggcgcttgtctctccgatctgcctggccgcctgc
ccaccctggagcgccgagcgcgcgcgcagcgaaatcggcgaactgacgcagcgactggcg
gcctgggacgatgcctatcaccgccgcggccttgcgccgatcgacgacgaactctacgac
caggcccgcgcacggctgcaacagtggcagcagtgctttgcagcccagaacgcgccctcg
ccgtcaccgctggccaaggcggggggcccgttgctccatcctgtcgcgcagaccggcttg
gccaagctggccgacgtcgccgagctgcgtgcctggatggcggcacgcgacgacctgtgg
attcagcccaaggtcgacggcgtggcggtgacgctggtctatcgcgacggccgcctgcgc
caggcgatcagccgcggcgacggacgcagcggtcaggactggacggcgcgggcccgccag
ctgccggcgatccccacgcagctgccgcgccgcgacgaggtgattctgcagggggagctg
tactggcggcaggacgcgcacgtgcaggcacgcgctggcagcgacggcgcacgcgggcgg
gtcgccggcgccctgcagggcaaaacgcccgccgcggacagcgaggcgcgcatcggcctg
ttcgtctgggactggcccaacggaccggccgagatggccaaacgcctgacgggactggca
gcaatgggcttcgccgacagcgtgcgtttcagccagcccctggccgatcccgaacaggcg
cgccagtggcgcgagcgctggtatcgccagccgctgcccttcgccagcgacggcgtggtg
ctgcgccagggccggcggccaccggccgaacgctggcaggcgtcaccgccgcactgggca
gtggcctggaagtatccgccgcgctcggcgctggcacaggtgcgccgggtcgagtttcgc
atcggccggcgcggccgcatcacgccattgctgcagctcgaacccgtgcaactggacgac
cgccgcatcgcccgcgtcagcctcggttcactcaaacgctggcaggcgctggacgttcgc
ccgggcgatcaggttgccatccgcctcgccggcttgaccattccgcagctggacagcgtc
gtctggcgcagtccgcagcgcgcggcagtgcagccaccgaatccggcccgctatcacgcg
ctgagctgctggcaggcgacgcccggctgcgaacagcagttcctcgcccgcctcgcctgg
ctgagcggcaggcacggcctggcaattcccggtgtcggccccggcacttggcgcgagctg
ctggacgccggcctgctgcgcgacctgctcgcctggctcgagctggatgccgcgcgcctg
caacatgtaccgggcttcggcgcgacgcgcgccaccactctggcgcgcaatcttgcagcg
acacgccagcggccgttcgcgcactggctggcggcgctgggcctgccggccgatgcggcg
ctcgcatcggacgacgactggcagcggctcgccgcgcgcagcgaagccgactggcgcgcc
gccggcagcggcgcagtccgcgcgcggcagctgtggcagttctttcgggccgacgcgccg
caagccctgcgcgcgcgcctgcaccaggccggtgtccgcggtttctga
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