Shewanella decolorationis: D0436_12995
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Entry
D0436_12995 CDS
T09167
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03030
DNA replication
sdeo03430
Mismatch repair
sdeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D0436_12995 (dnaX)
03430 Mismatch repair
D0436_12995 (dnaX)
03440 Homologous recombination
D0436_12995 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdeo03032
]
D0436_12995 (dnaX)
03400 DNA repair and recombination proteins [BR:
sdeo03400
]
D0436_12995 (dnaX)
Enzymes [BR:
sdeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D0436_12995 (dnaX)
DNA replication proteins [BR:
sdeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D0436_12995 (dnaX)
DNA repair and recombination proteins [BR:
sdeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D0436_12995 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
AAA
AAA_22
RuvB_N
AAA_5
AAA_16
DNA_pol3_delta
PIF1
AAA_14
ResIII
TsaE
AAA_19
AAA_assoc_2
AAA_18
AAA_2
AAA_7
TniB
Adeno_E1B_55K_N
Motif
Other DBs
NCBI-ProteinID:
QDZ91296
UniProt:
A0A5B8QZB4
LinkDB
All DBs
Position
2165723..2168800
Genome browser
AA seq
1025 aa
AA seq
DB search
MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQKRLHHAYLFTGTRGVGKTSLARLFAK
GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF
KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTL
QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM
LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA
AAQQSLYSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPE
KPVKRWLVEDAAKVSLPAQQPTSAMPVSNMTAVEQAVNQAVAEKKTPLTAERDLQALPQV
ATTEPMAKSENATASQQALSAEDMLAVDDAIDDGAELNAALIAEQQVILSQDQSQGFGAS
VVSSTEAVLISESSPNSKTDASPDLSAESSSVSMPASNLDTEHNQAVMVDSESLNSSLSA
LTVVDLSAEEYAQAGVNESTDALAPDEYSAEDYGQYDYAAAPLDAYQDDYSQFMAEEQGG
FSGMEESSLNRDSAQSIGESFASTTSQASTPPASTTVSLEDDDILSAVLAARDSLLSDLD
ALSTKEGDGKKSAAEVKLKTPSQSAYTAPVSHSPSHKTPSVDASTKHQVVSHTSDNDFEL
PFDDDFEAELLLESQSNVTPTPPLDPNDRPPWEEAPVAAMDETHAPAASVNLQTESPVAA
QTAVEDLGAAPVAAQTSPTDNEPTRVVQALEQAAIQESEPAAQSPEMNTAPQPPQALTSQ
LTQQQIQQPAQPQDAVQSQSSETVQPTSSTALTLAQSITGHPLDLHWYKLMASLDIGGRV
RQLAVNSICQVQANPLPLLLKPDQKHLAAPVAIEQLEQALTAALGNPRQVEVVIGSDPSR
ETPLEMRKRFHQELLQQACQSLMMDDNVQWLINRFGAELDQDSLLYPPELLAQRSGLIPA
LPEPE
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatcaggtgttagccagaaaatggcgccctgccacattcgaacagatggtcggc
caaagccacgtgttgcacgcgctcacgaatgcgttgacgcaaaaacgtttacaccacgct
tatctttttacgggtacacgcggtgtgggcaagaccagtttggcgcgcctcttcgctaaa
ggcctcaactgtgaaaagggcgtaacggcttcaccctgcggcgtgtgtggcagctgtgtc
gaaattgcccaaggccgctttgttgacttaatcgaagtcgatgccgcctcgcgcactaaa
gtcgatgacacccgcgaactcttagacaatgtgcaatatcgcccgacccgtggccgtttt
aaggtctacctgattgacgaagtgcacatgctctcccgtagcagttttaatgcgctgcta
aaaacccttgaagaaccgccagagcatgtgaagtttttgctggcgacgactgatccgcaa
aagctgccggtgactgtattatcccgctgcctgcaatttaacttaaagagcttaaccctg
caggaaattggcactcagctacagcatattttaacccaagagcaattgccctttgagcac
gaagccttaaccctgctcgccaaagcggccaatggcagtatgcgtgatgccttaagtttg
accgatcaggccattgcctttggtggcggcacggtaatgctcaatcaagtgcaatctatg
ttgggtagcattgatgagcagcatgtgctgcgcttacttaaagccttaaccgatgccgat
atcggcgtattgatgcaaagctgcgcacaggtgctcgcctatggcgcggacgcccaagaa
gtgctgcgcagtttgctagaattattgcatcaaattactttgactcaatttgcgccagcc
gccgcgcagcaatccctttatagcgcacaaatacaggcctttgccgagcaattagcgcca
gaacaagtgcagttgtattaccagattttactgactggccgtaaagacttaccccatgcg
ccggatcctaaatcgggccttgaaatggcgctgctgcgggcagtggcatttgttcccgaa
aagccagtaaaacgttggctggttgaagatgctgcaaaggtgagtttgcctgctcagcag
ccaacgtcggctatgcccgtatccaatatgacagcggtagaacaggccgtgaatcaggct
gtggctgaaaaaaaaactccactaaccgctgagcgtgacttacaggctctgccacaagta
gcaacgactgagcctatggctaagagtgagaacgctacagcttcgcaacaagccttatct
gctgaggatatgttagctgtcgatgatgcgattgatgatggggctgaactgaatgccgct
ttaattgccgagcagcaagtgatcttaagccaagatcaaagccaaggctttggtgcaagt
gtggtatcgagtactgaggccgtcttaatttcagaatcaagccctaactcaaaaactgac
gcaagccctgacttaagcgctgagtcgagctcagtttctatgccggcatcgaatcttgat
actgagcataatcaagctgtgatggtggattccgagagccttaattcttctctctcggca
ttaacagtagttgacttatccgcagaggaatatgctcaagcgggtgttaatgagagtaca
gatgcgctagcgccagacgaatattccgctgaggattacggacaatacgattatgccgct
gcgccactcgatgcctatcaggatgattattcacaatttatggctgaggagcagggcgga
ttctctggcatggaagagagttcgcttaatcgcgacagtgctcagtctattggcgaaagc
ttcgcttcaacaacctctcaggcttcaacacctccagcttcaactactgtttcccttgag
gatgacgatattttatcggcggtattagcggcgcgtgactccttgttatccgatcttgat
gcgctcagcaccaaggaaggtgatggaaaaaagtcggcagcggaagttaagcttaaaact
ccgagccagagtgcgtataccgcgccagtctctcactcgccatcgcataaaacgccttca
gttgatgcatctaccaagcatcaagtggttagtcacacgtccgataacgactttgagctg
ccatttgacgatgatttcgaggccgagctccttcttgagtcacagtcaaatgttacgcca
actccgccgcttgatccgaacgatcgcccgccatgggaagaggcgccagttgctgcgatg
gatgagacccatgcgcccgctgcaagtgttaacctacagactgaatcccctgtcgcggcg
caaacagctgttgaggatttaggcgctgcacccgttgccgctcaaacatcgccaacggat
aacgagccgacacgggttgtgcaagcgttagagcaagcggctatacaagaaagcgagcca
gctgcgcaaagccctgagatgaatacggcgccgcagccgcctcaggcacttacatcacaa
ctaacgcagcaacaaatacagcaaccggctcagccacaagatgcggtgcagtcacagtca
agcgagacagtacaaccaacgtcatccaccgcattaacgctggcgcaatcgattaccggt
catcccttagacttgcattggtataagctcatggcgagcctagatattggcggccgtgtg
cgtcagttggcggtaaactcgatttgtcaggtgcaggctaaccctttgccgttgctgcta
aaacctgaccagaaacatttagcggcgcccgtggcgattgagcagcttgagcaggcattg
acagccgcattggggaacccaagacaggttgaggtggtcataggaagcgatccttcgcgg
gagacccccttagagatgcgcaaacgttttcaccaagagttactgcagcaggcatgccaa
tcgctaatgatggacgataatgtgcaatggctgattaaccgttttggcgccgagctggat
caggatagtttactttatccgccagagttgttagcccagcgtagtggactcattcccgca
ctacctgagcccgagtaa
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